CryoEM structure of bacteriophage Q-beta coat protein dimer with AYGG linker
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 8feh
Q-score: 0.366
Newton TP, Zhao L, Kopylov M, Finn MG
To Be Published
- Qubevirus durum (Virus from Qubevirus durum)
- Minor capsid protein a1 fusion (28 kDa, Protein from Qubevirus durum)
CryoEM structure of PP7 virus-like particle from a multi-species dataset
To Be Published
- Pseudomonas phage pp7 (2 MDa, Virus from Pseudomonas phage PP7)
Structure of human Apoferritin from a multi-species dataset
To Be Published
- Recombinantly expressed human apoferritin (2 MDa, Complex from Homo sapiens)
Structure of Tobacco Mosaic Virus from a multi-species dataset
To Be Published
- Tobacco mosaic virus (40 MDa, Virus from Tobacco mosaic virus)
CryoEM structure of Conalbumin from chicken egg white (sigma-Cas 1391-06-6)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8fei
Q-score: 0.475
Newton TP, Zimanyi C, Kopylov M
To Be Published
- Ovotransferrin (77 kDa, Protein from Gallus gallus)
- Conalbumin from chicken egg white (Cellular component from Gallus gallus)
- Fe (iii) ion (55 Da, Ligand)
The structure of bovine thyroglobulin with iodinated tyrosines
Resolution: 2.61 Å
EM Method: Single-particle
Fitted PDBs: 7n4y
Q-score: 0.64
Kim K, Kopylov M, Bobe D, Kelley K, Eng ET, Arvan P, Clarke OB
Acta Crystallogr D Struct Biol (2021) 77 pp. 1451-1459 [ DOI: doi:10.1107/S2059798321010056 Pubmed: 34726172 ]
- Thyroglobulin (303 kDa, Protein from Bos indicus x Bos taurus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Water (18 Da, Ligand)
- Bovine thyroglobulin purified from bovine thyroid (660 kDa, Complex from Bos indicus x Bos taurus)
Structure of DNA Polymerase Zeta (Apo)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6v8p
Q-score: 0.369
Malik R, Kopylov M, Gomez-Llorente Y, Jain R, Johnson RE, Prakash L, Prakash S, Ubarretxena-Belandia I, Aggarwal AK
Nat Struct Mol Biol (2020) 27 pp. 913-924 [ Pubmed: 32807989 DOI: doi:10.1038/s41594-020-0476-7 ]
- Dna polymerase zeta catalytic subunit (177 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase delta subunit 3 (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase zeta processivity subunit (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase delta small subunit (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iron/sulfur cluster (351 Da, Ligand)
- Apo (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Structure of DNA Polymerase Zeta/DNA/dNTP Ternary Complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6v93
Q-score: 0.539
Malik R, Kopylov M, Gomez-Llorente Y, Jain R, Johnson RE, Prakash L, Prakash S, Ubarretxena-Belandia I, Aggarwal AK
Nat Struct Mol Biol (2020) 27 pp. 913-924 [ Pubmed: 32807989 DOI: doi:10.1038/s41594-020-0476-7 ]
- Dna polymerase zeta catalytic subunit (177 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Calcium ion (40 Da, Ligand)
- Dna polymerase delta subunit 3 (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Structure of dna complex (Complex from Saccharomyces cerevisiae)
- Dna polymerase zeta processivity subunit (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase delta small subunit (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna (9 kDa, DNA from synthetic construct)
- 2'-deoxycytidine-5'-triphosphate (467 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
Class 2 from 3D classification of Bacillus subtilus delta HPF ribosomes
Feaga HA, Kopylov M, Kim JK, Jovanovic M, Dworkin J
J Bacteriol (2020) 202 [ DOI: doi:10.1128/JB.00009-20 Pubmed: 32123037 ]