The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8fn2
Q-score: 0.379
Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK
Nat Commun (2023) 14 pp. 6961-6961 [ DOI: doi:10.1038/s41467-023-42266-7 Pubmed: 37907464 ]
- 50s ribosomal subunit (Complex from Borreliella burgdorferi)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l14 (13 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l18 (13 kDa, Protein from Borreliella burgdorferi B31)
- 5s ribosomal rna (36 kDa, RNA from Borreliella burgdorferi B31)
- 50s ribosomal protein l23 (11 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l24 (11 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l25 (20 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l17 (14 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein ul30 (11 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l35 (7 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein bl38 (5 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l22 (13 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l10 (18 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l13 (16 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l5 (20 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l16 (15 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l36 (4 kDa, Protein from Borreliella burgdorferi B31)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l21 (12 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l34 (6 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l9 (17 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l32 (6 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l3 (22 kDa, Protein from Borreliella burgdorferi B31)
- 23s ribosomal rna (948 kDa, RNA from Borreliella burgdorferi B31)
- 50s ribosomal protein l11 (14 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l4 (23 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l19 (13 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l28 (10 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l15 (16 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l2 (30 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l33 (6 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l29 (7 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l27 (8 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l20 (13 kDa, Protein from Borreliella burgdorferi B31)
- 50s ribosomal protein l6 (19 kDa, Protein from Borreliella burgdorferi B31)
Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7l20
Q-score: 0.472
Koripella RK, Deep A, Agrawal EK, Keshavan P, Banavali NK, Agrawal RK
Nat Commun (2021) 12 pp. 3607-3607 [ Pubmed: 34127662 DOI: doi:10.1038/s41467-021-23726-4 ]
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- Cryo-em structure of mammalian mitochondrial ribosome complex with mtefg-2 and mtrrf (Complex from Homo sapiens)
- Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- 39 s p-site finger (5 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- Ribosome-releasing factor 2, mitochondrial (77 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l48, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- Ribosome-recycling factor, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- 16s rrna mitochondrial (500 kDa, RNA from Homo sapiens)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- Trnaval (23 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 6neq
Q-score: 0.247
Koripella RK, Sharma MR, Haque ME, Risteff P, Spremulli LL, Agrawal RK
iScience (2019) 12 pp. 76-86 [ Pubmed: 30677741 DOI: doi:10.1016/j.isci.2018.12.030 ]
- 28s ribosomal protein s27, mitochondrial (48 kDa, Protein from Bos taurus)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Bos taurus)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Bos taurus)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Bos taurus)
- Dap3 protein (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18c, mitochondrial (16 kDa, Protein from Bos taurus)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Bos taurus)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Bos taurus)
- 28s ribosomal protein s5, mitochondrial (47 kDa, Protein from Bos taurus)
- 28s ribosomal protein s22, mitochondrial (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Bos taurus)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Bos taurus)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Bos taurus)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Bos taurus)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Bos taurus)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal rna, mitochondrial (306 kDa, RNA from Bos taurus)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (60 kDa, Protein from Bos taurus)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Bos taurus)
- Translation initiation factor if-3, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Bos taurus)
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 6nf8
Q-score: 0.312
Koripella RK, Sharma MR, Haque ME, Risteff P, Spremulli LL, Agrawal RK
iScience (2019) 12 pp. 76-86 [ Pubmed: 30677741 DOI: doi:10.1016/j.isci.2018.12.030 ]
- 28s ribosomal protein s27, mitochondrial (48 kDa, Protein from Bos taurus)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Bos taurus)
- 28s ribosomal rna, mitochondria (306 kDa, RNA from Bos taurus)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Bos taurus)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Bos taurus)
- Dap3 protein (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18c, mitochondrial (16 kDa, Protein from Bos taurus)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Bos taurus)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Bos taurus)
- 28s ribosomal protein s5, mitochondrial (47 kDa, Protein from Bos taurus)
- 28s ribosomal protein s22, mitochondrial (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Bos taurus)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Bos taurus)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Bos taurus)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Bos taurus)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Bos taurus)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Bos taurus)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (60 kDa, Protein from Bos taurus)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Bos taurus)
- Translation initiation factor if-3, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Bos taurus)
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6dzp
Q-score: 0.464
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK
PNAS (2018) 115 pp. 8191-8196 [ Pubmed: 30038002 DOI: doi:10.1073/pnas.1804555115 ]
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l21 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Mycobacterium smegmatis c(minus) 70s ribosome with mpy (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l31 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l28 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Uncharacterized protein (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))