Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 6vmi
Q-score: 0.339
Koripella RK, Sharma MR, Bhargava K, Datta PP, Kaushal PS, Keshavan P, Spremulli LL, Banavali NK, Agrawal RK
Nat Commun (2020) 11 pp. 3830-3830 [ DOI: doi:10.1038/s41467-020-17715-2 Pubmed: 32737313 ]
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- Mrna (3 kDa, DNA from Homo sapiens)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- P-site finger (5 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- P-site and e-site trna (20 kDa, DNA from Homo sapiens)
- Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l48, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- Human mitochondrial ribosome-ef-g1 complex (Complex from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- Elongation factor g, mitochondrial (83 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (17 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- Trnaval (23 kDa, RNA from Homo sapiens)
Structural insights into unique features of the human mitochondrial ribosome recycling
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6nu2
Q-score: 0.246
Koripella RK, Sharma MR, Risteff P, Keshavan P, Agrawal RK
PNAS (2019) 116 pp. 8283-8288 [ DOI: doi:10.1073/pnas.1815675116 Pubmed: 30962385 ]
- 28s ribosomal protein s22, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l46, mitochondrial (27 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (3 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (10 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (45 kDa, Protein from Homo sapiens)
- 12s rrna (296 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (16 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (13 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (14 kDa, Protein from Homo sapiens)
- Structural insights into unique features of the human mitochondrial ribosome bound with mtrrf -class-1 (Complex from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (32 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (5 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (38 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l51, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (12 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (18 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (26 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (10 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (6 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (9 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (31 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (9 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (18 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l36, mitochondrial (4 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (28 kDa, Protein from Homo sapiens)
- Ribosome-recycling factor, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (5 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (42 kDa, Protein from Homo sapiens)
- Aurora kinase a-interacting protein (8 kDa, Protein from Homo sapiens)
- 16s rrna (472 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (41 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (13 kDa, Protein from Homo sapiens)
- E-site trna (589 Da, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s29, mitochondrial (39 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (32 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l19, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (34 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (11 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (50 kDa, Protein from Homo sapiens)
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (16 kDa, Protein from Homo sapiens)
- Mt-trnaval (17 kDa, RNA from Homo sapiens)
Structural insights into unique features of the human mitochondrial ribosome recycling
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6nu3
Q-score: 0.095
Koripella RK, Sharma MR, Risteff P, Keshavan P, Agrawal RK
PNAS (2019) 116 pp. 8283-8288 [ DOI: doi:10.1073/pnas.1815675116 Pubmed: 30962385 ]
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- 12s rrna (296 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (26 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial,ms39 (50 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- Cdna flj61100, highly similar to 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 16s rrna (472 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- E-site trna (589 Da, RNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l19, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- Mt-trnaval (17 kDa, RNA from Homo sapiens)
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 6neq
Q-score: 0.247
Koripella RK, Sharma MR, Haque ME, Risteff P, Spremulli LL, Agrawal RK
iScience (2019) 12 pp. 76-86 [ Pubmed: 30677741 DOI: doi:10.1016/j.isci.2018.12.030 ]
- 28s ribosomal protein s27, mitochondrial (48 kDa, Protein from Bos taurus)
- Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit (Complex from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Bos taurus)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Bos taurus)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Bos taurus)
- Dap3 protein (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s18c, mitochondrial (16 kDa, Protein from Bos taurus)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Bos taurus)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Bos taurus)
- 28s ribosomal protein s5, mitochondrial (47 kDa, Protein from Bos taurus)
- 28s ribosomal protein s22, mitochondrial (40 kDa, Protein from Bos taurus)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Bos taurus)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Bos taurus)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Bos taurus)
- 28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Bos taurus)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Bos taurus)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Bos taurus)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Bos taurus)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Bos taurus)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Bos taurus)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Bos taurus)
- 28s ribosomal rna, mitochondrial (306 kDa, RNA from Bos taurus)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (60 kDa, Protein from Bos taurus)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Bos taurus)
- Translation initiation factor if-3, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Bos taurus)
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 6dzi
Q-score: 0.438
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK
PNAS (2018) 115 pp. 8191-8196 [ Pubmed: 30038002 DOI: doi:10.1073/pnas.1804555115 ]
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s16 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l29 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 5s rna (118-mer) (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 23 s rrna (3119-mer) (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s19 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l21 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Conserved protein domain (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s11 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l11 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s5 (18 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Ribosome hibernation promoting factor (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l17 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l28 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l10 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s14 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l3 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l31 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 70s-mpy complex (Complex from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s13 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l22 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Uncharacterized protein (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l30 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l25 (20 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s2 (25 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s9 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s17 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s18 1 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 16s rrna (490 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l5 (20 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6dzk
Q-score: 0.419
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK
PNAS (2018) 115 pp. 8191-8196 [ Pubmed: 30038002 DOI: doi:10.1073/pnas.1804555115 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Mycobacterium smegmatis (cminus) 70s with mpy (Complex from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s18 1 (9 kDa, Protein from Mycobacterium smegmatis)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Ribosome hibernation promoting factor (26 kDa, Protein from Mycobacterium smegmatis)
- 30s ribosomal protein s14 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l31 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 16s rrna (490 kDa, RNA from Mycobacterium smegmatis str. MC2 155)