Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7bu8
Q-score: 0.397
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zika virus m protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Complex of zika virus with sign-3c fab (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Sign-3c fab (Complex)
- Zika virus (Complex from Homo sapiens)
- Genome polyprotein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7bua
Q-score: 0.249
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of zika virus with sign-3c fab (Complex from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Sign-3c fab (Complex)
- Zika virus (Complex from Homo sapiens)
- Zika virus m protein (8 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Genome polyprotein (54 kDa, Protein from Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 6.5
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7bub
Q-score: 0.376
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dengue virus serotype 2 (Complex)
- Dengue virus serotype 2 m protein (8 kDa, Protein from Dengue virus 2)
- Dengue virus serotype2 e protein (54 kDa, Protein from Dengue virus 2)
- Sign-3c fab (Complex from Dengue virus 2)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
- Complex of dengue virus serotype 2 with sign-3c fab (Complex from Homo sapiens)
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 8.0
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7bud
Q-score: 0.334
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Dengue virus serotype 2 (Complex)
- Dengue virus serotype 2 m protein (8 kDa, Protein from Dengue virus 2)
- Sign-3c fab (Complex from Dengue virus 2)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- Dengue virus serotype 2 e protein (54 kDa, Protein from Dengue virus 2)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
- Complex of dengue virus serotype 2 with sign-3c fab (Complex from Homo sapiens)
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 5.0
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 7bue
Q-score: 0.129
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- Sign-3c fab (Complex from Dengue virus 2)
- Complex of dengue virus serotype 2 with sign-3c fab (Complex from Homo sapiens)
- Sign-3c fab heavy chain (14 kDa, Protein from Homo sapiens)
- Dengue serotype 2 e protein ectodomain (43 kDa, Protein from Dengue virus 2)
- Sign-3c fab light chain (11 kDa, Protein from Homo sapiens)
- Dengue virus serotype 2 (Complex)
Cryo-EM structure of Dengue virus serotype 2 complexed with SIgN-3C IgG
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 7buf
Q-score: 0.157
Zhang S, Loy T, Ng TS, Lim XN, Chew SV, Tan TY, Xu M, Kostyuchenko VA, Tukijan F, Shi J, Fink K, Lok SM
Cell Rep (2020) 31 pp. 107584-107584 [ DOI: doi:10.1016/j.celrep.2020.107584 Pubmed: 32348755 ]
- Sign-3c igg heavy chain (14 kDa, Protein from Homo sapiens)
- Dengue virus serotype 2 e protein (54 kDa, Protein from Dengue virus 2)
- Dengue virus serotype 2 m protein (8 kDa, Protein from Dengue virus 2)
- Sign-3c igg (Complex from Dengue virus 2)
- Complex of dengue virus serotype 2 with sign-3c igg (Complex from Homo sapiens)
- Sign-3c igg light chain (11 kDa, Protein from Homo sapiens)
- Dengue virus serotype 2 (Complex)
Resolution: 16.0 Å
EM Method: Single-particle
Fitted PDBs: 1tja, 3j2n, 2fl9, 3foi, 3h3y
Q-score: 0.0646
Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG
Cell (2004) 118 pp. 419-429 [ Pubmed: 15315755 DOI: doi:10.1016/j.cell.2004.07.022 ]
- Enterobacteria phage t4 (220 MDa, Virus from Enterobacteria phage T4)
- T4 phages treated with 3 m urea (220 MDa, Sample)
Resolution: 18.0 Å
EM Method: Single-particle
Fitted PDBs: 1tja
Q-score: 0.049
Leiman PG, Chipman PR, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG
Cell (2004) 118 pp. 419-429 [ Pubmed: 15315755 DOI: doi:10.1016/j.cell.2004.07.022 ]
- Enterobacteria phage t4 (220 MDa, Virus from Enterobacteria phage T4)
- T4 phages treated with 3 m urea (220 MDa, Sample)