Sub-tomogram averaging of immature Zika virus in complex with Fab DV62.5
Tan TY, Fibriansah G, Kostyuchenko VA, Ng TS, Lim XX, Zhang S, Lim XN, Wang J, Shi J, Morais MC, Corti D, Lok SM
Nat Commun (2020) 11 pp. 895-895 [ Pubmed: 32060358 DOI: doi:10.1038/s41467-020-14647-9 ]
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 6idi
Q-score: 0.079
Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe Jr JE, Bond PJ, Lok SM
Structure (2019) 27 pp. 253-267.e8 [ Pubmed: 30471923 DOI: doi:10.1016/j.str.2018.10.009 ]
- Dengue virus 3 (Virus from Dengue virus 3)
- Envelope protein (53 kDa, Protein from Dengue virus 3)
- Fab 1h10 (Complex from Homo sapiens)
- Premembrane protein (18 kDa, Protein from Dengue virus 3)
- Fab 1h10 light chain (v-region) (12 kDa, Protein from Homo sapiens)
- Dengue virus 3 in complex with human antibody (Complex)
- Fab 1h10 heavy chain (v-region) (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 5h32
Q-score: 0.073
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ Pubmed: 27882950 DOI: doi:10.1038/ncomms13679 ]
- Zika virus (Complex from Zika virus)
- C10 igg light chain variable region (11 kDa, Protein from Homo sapiens)
- Structural protein e (44 kDa, Protein from Zika virus)
- Fab c10 (Complex)
- Zika virus complexed with fab c10 at ph 5.0 (Complex)
- C10 igg heavy chain variable region (14 kDa, Protein from Homo sapiens)
Fibriansah G, Ibarra KD, Ng TS, Smith SA, Tan JL, Lim XN, Ooi JSG, Kostyuchenko VA, Wang J, de Silva AM, Harris E, Crowe JE, Lok SM
Science (2015) 349 pp. 88-91 [ DOI: doi:10.1126/science.aaa8651 Pubmed: 26138979 ]
The 14 A Cryo-EM structure of Dengue virus at 37C
Resolution: 13.7 Å
EM Method: Single-particle
Fitted PDBs: 3zko
Q-score: 0.045
Fibriansah G, Ng TS, Kostyuchenko VA, Lee J, Lee S, Wang J, Lok SM
J Virol (2013) 87 pp. 7585-7592 [ Pubmed: 23637405 DOI: doi:10.1128/JVI.00757-13 ]
Immature West Nile Virus (WNV) in complex with Fab fragments of the anti-fusion loop antibody E53
Resolution: 15.0 Å
EM Method: Single-particle
Fitted PDBs: 3ixx
Q-score: 0.033
Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Chen BR, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH
EMBO J (2009) 28 pp. 3269-3276 [ DOI: doi:10.1038/emboj.2009.245 Pubmed: 19713934 ]
- Immature west nile virus (18 MDa, Virus)
- Immature west nile virus complexed with e53 fab (24 MDa, Sample)
The tail structure of bacteriophage T4 and its mechanism of contraction.
Resolution: 15.0 Å
EM Method: Single-particle
Fitted PDBs: 1zku, 2bsg, 3j2m, 3foh
Kostyuchenko VA, Chipman PR, Leiman PG, Arisaka F, Mesyanzhinov VV, Rossmann MG
Nat Struct Mol Biol (2005) 12 pp. 810-813 [ Pubmed: 16116440 DOI: doi:10.1038/nsmb975 ]
Three-dimensional structure of bacteriophage T4 baseplate.
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 1pdf, 1pdi, 1pdj, 1pdl, 1pdm, 1pdp, 2fl8, 3h3w
Q-score: 0.04975
Kostyuchenko VA, Leiman PG, Chipman PR, Kanamaru S, van Raaij MJ, Arisaka F, Mesyanzhinov VV, Rossmann MG
Nat Struct Mol Biol (2003) 10 pp. 688-693 [ Pubmed: 12923574 DOI: doi:10.1038/nsb970 ]