Mycobacterium smegnatis RNAP open promoter complex with SigmaA and RbpA
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8qti
Q-score: 0.516
Koval T, Borah N, Sudzinova P, Brezovska B, Sanderova H, Vankova Hausnerova V, Krenkova A, Hubalek M, Trundova M, Adamkova K, Duskova J, Schwarz M, Wiedermannova J, Dohnalek J, Krasny L, Kouba T
Nat Commun (2024) 15 pp. 8740-8740 [ Pubmed: 39384756 DOI: doi:10.1038/s41467-024-52891-5 ]
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Mycobacterium smegnatis rnap open promoter complex with sigmaa and rbpa (Complex from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Dna 50-mer template strand (15 kDa, DNA from Mycolicibacterium smegmatis MC2 155)
- Dna 50-mer non-template strand (15 kDa, DNA from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase-binding protein rbpa (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase sigma factor siga (51 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8r6p
Q-score: 0.466
Koval T, Borah N, Sudzinova P, Brezovska B, Sanderova H, Vankova Hausnerova V, Krenkova A, Hubalek M, Trundova M, Adamkova K, Duskova J, Schwarz M, Wiedermannova J, Dohnalek J, Krasny L, Kouba T
Nat Commun (2024) 15 pp. 8740-8740 [ Pubmed: 39384756 DOI: doi:10.1038/s41467-024-52891-5 ]
- Dna 50-mer (15 kDa, DNA from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegnatis rna polymerase rp2-like transcription initiation complex with sigmaa, rbpa, held n-terminal domain and open promoter dna (Complex from Mycolicibacterium smegmatis MC2 155)
- Dna 50-mer (15 kDa, DNA from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase-binding protein rbpa (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase sigma factor siga (51 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Helicase (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8r6r
Q-score: 0.308
Koval T, Borah N, Sudzinova P, Brezovska B, Sanderova H, Vankova Hausnerova V, Krenkova A, Hubalek M, Trundova M, Adamkova K, Duskova J, Schwarz M, Wiedermannova J, Dohnalek J, Krasny L, Kouba T
Nat Commun (2024) 15 pp. 8740-8740 [ Pubmed: 39384756 DOI: doi:10.1038/s41467-024-52891-5 ]
- Dna 50-mer (15 kDa, DNA from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegnatis rna polymerase rp2-like transcription initiation complex with sigmaa, rbpa and open promoter dna (Complex from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Dna 50-mer (15 kDa, DNA from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase-binding protein rbpa (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase sigma factor siga (51 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 6yxu
Q-score: 0.501
Kouba T, Koval' T, Sudzinova P, Pospisil J, Brezovska B, Hnilicova J, Sanderova H, Janouskova M, Sikova M, Halada P, Sykora M, Barvik I, Novacek J, Trundova M, Duskova J, Skalova T, Chon U, Murakami KS, Dohnalek J, Krasny L
Nat Commun (2020) 11 pp. 6419-6419 [ Pubmed: 33339823 DOI: doi:10.1038/s41467-020-20158-4 ]
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegmatis held protein in complex with rna polymerase core (444 kDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase-associated transcription factor held (81 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 6yys
Q-score: 0.484
Kouba T, Koval' T, Sudzinova P, Pospisil J, Brezovska B, Hnilicova J, Sanderova H, Janouskova M, Sikova M, Halada P, Sykora M, Barvik I, Novacek J, Trundova M, Duskova J, Skalova T, Chon U, Murakami KS, Dohnalek J, Krasny L
Nat Commun (2020) 11 pp. 6419-6419 [ Pubmed: 33339823 DOI: doi:10.1038/s41467-020-20158-4 ]
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegmatis held protein in complex with rna polymerase core (state 2) (444 kDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase-associated transcription factor held (81 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 6z11
Q-score: 0.471
Kouba T, Koval T, Dohnalek J, Krasny L
To Be Published
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (146 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Mycobacterium smegmatis held protein in complex with rna polymerase core (444 kDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rna polymerase-associated transcription factor held (81 kDa, Protein from Mycolicibacterium smegmatis MC2 155)