Cryo-EM structure of the DNA polymerase holoenzyme E9-A20-D4 of vaccinia virus
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8q3r
Q-score: 0.26
Burmeister WP, Boutin L, Balestra AC, Groger H, Ballandras-Colas A, Hutin S, Kraft C, Grimm C, Bottcher B, Fischer U, Tarbouriech N, Iseni F
PLoS Pathog (2024) 20 pp. e1011652-e1011652 [ Pubmed: 38768256 DOI: doi:10.1371/journal.ppat.1011652 ]
- Dna polymerase (120 kDa, Protein from Vaccinia virus Copenhagen)
- Uracil-dna glycosylase (27 kDa, Protein from Vaccinia virus Copenhagen)
- Dna polymerase processivity factor component opg148 (49 kDa, Protein from Vaccinia virus Copenhagen)
- E9-a20-d4 dna polymerase holoenzyme (196 MDa, Complex from Vaccinia virus)
HBc-F97L premature secretion phenotype
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7pz9
Q-score: 0.574
Makbul C, Kraft C, Griessmann M, Rasmussen T, Katzenberger K, Lappe M, Pfarr P, Stoffer C, Stohr M, Wandinger AM, Bottcher B
Viruses (2021) 13 [ DOI: doi:10.3390/v13112115 Pubmed: 34834922 ]
HBc-F97L (premature secretion phenotype) in complex with Triton X-100
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7pzi
Q-score: 0.601
Makbul C, Kraft C, Griessmann M, Rasmussen T, Katzenberger K, Lappe M, Pfarr P, Stoffer C, Stohr M, Wandinger AM, Bottcher B
Viruses (2021) 13 [ DOI: doi:10.3390/v13112115 Pubmed: 34834922 ]
HBc-WT in complex with Triton X-100
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7pzk
Q-score: 0.571
Makbul C, Kraft C, Griessmann M, Rasmussen T, Katzenberger K, Lappe M, Pfarr P, Stoffer C, Stohr M, Wandinger AM, Bottcher B
Viruses (2021) 13 [ DOI: doi:10.3390/v13112115 Pubmed: 34834922 ]
HBc-F97L premature secretion phenotype
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7pzl
Q-score: 0.612
Makbul C, Kraft C, Griessmann M, Rasmussen T, Katzenberger K, Lappe M, Pfarr P, Stoffer C, Stohr M, Wandinger AM, Bottcher B
Viruses (2021) 13 [ DOI: doi:10.3390/v13112115 Pubmed: 34834922 ]
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7pzm
Q-score: 0.587
Makbul C, Kraft C, Griessmann M, Rasmussen T, Katzenberger K, Lappe M, Pfarr P, Stoffer C, Stohr M, Wandinger AM, Bottcher B
Viruses (2021) 13 [ DOI: doi:10.3390/v13112115 Pubmed: 34834922 ]
wt HBc capsid like particles in complex with inhibitory peptide SLLGRM and Triton X-100
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pzn
Q-score: 0.556
Makbul C, Kraft C, Griessmann M, Rasmussen T, Katzenberger K, Lappe M, Pfarr P, Stoffer C, Stohr M, Wandinger AM, Bottcher B
Viruses (2021) 13 [ DOI: doi:10.3390/v13112115 Pubmed: 34834922 ]
- Capsid protein (21 kDa, Protein from Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979))
- Wt hbc copurified with triton x-100 and sllgrm (Complex from Hepatitis B virus ayw/France/Tiollais/1979)
- Fragment of triton x-100 (352 Da, Ligand)
- Sllgrm, modelled as poly-a,sllgrm, modelled as poly-a (1 kDa, Protein from Escherichia coli)
Mechanosensitive channel MscS solubilized with LMNG in open conformation
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 7onj
Q-score: 0.637
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
- Lauryl maltose neopentyl glycol (1 kDa, Ligand)
- Water (18 Da, Ligand)
- Homoheptameric complex of mscs coordinated with lipids and detergents ddm and lmng (224 kDa, Complex from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Mechanosensitive channel of small conductance (mscs) (31 kDa, Protein from Escherichia coli)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Mechanosensitive channel MscS solubilized with DDM in closed conformation
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7onl
Q-score: 0.427
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
Mechanosensitive channel MscS solubilized with DDM in open conformation
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7oo0
Q-score: 0.559
Flegler VJ, Rasmussen A, Borbil K, Boten L, Chen HA, Deinlein H, Halang J, Hellmanzik K, Loffler J, Schmidt V, Makbul C, Kraft C, Hedrich R, Rasmussen T, Bottcher B
PNAS (2021) 118 [ Pubmed: 34376558 DOI: doi:10.1073/pnas.2107095118 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Mechanosensitive channel mscs (31 kDa, Protein from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Homoheptameric complex of mscs coordinated with lipids and detergent ddm (224 kDa, Complex from Escherichia coli)