Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ Pubmed: 39788982 DOI: doi:10.1038/s41467-025-55897-9 ]
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Complex of e. coli transcription termination factor rho with atp and p4 polarity suppression protein psu (Complex)
- Transcription termination factor rho (Complex from Escherichia coli)
Rho-ATP-Psu complex II expanded
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ Pubmed: 39788982 DOI: doi:10.1038/s41467-025-55897-9 ]
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Complex of e. coli transcription termination factor rho with atp and p4 polarity suppression protein psu (Complex)
- Transcription termination factor rho (Complex from Escherichia coli)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9gcu
Q-score: 0.475
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ Pubmed: 39788982 DOI: doi:10.1038/s41467-025-55897-9 ]
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Transcription termination factor rho p167l variant (Complex from Escherichia coli)
- Complex of e. coli transcription termination factor rho p167l variant with atp gamma s (Complex)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 8k3o
Q-score: 0.307
Afsar M, Shukla A, Ali F, Maurya RK, Bharti S, Kumar N, Sadik M, Chandra S, Rahil H, Kumar S, Ansari I, Jahan F, Habib S, Hussain T, Krishnan MY, Ramachandran R
Nucleic Acids Res (2024) 52 pp. 13996-14012 [ Pubmed: 39588766 DOI: doi:10.1093/nar/gkae1130 ]
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 16s rrna (503 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- Cleaved ap-mrna (7 kDa, RNA from Escherichia coli K-12)
- 30s ribosome with cleaved ap-mrna (Complex from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 1)
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 2)
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8k4e
Q-score: 0.369
Afsar M, Shukla A, Ali F, Maurya RK, Bharti S, Kumar N, Sadik M, Chandra S, Rahil H, Kumar S, Ansari I, Jahan F, Habib S, Hussain T, Krishnan MY, Ramachandran R
Nucleic Acids Res (2024) 52 pp. 13996-14012 [ Pubmed: 39588766 DOI: doi:10.1093/nar/gkae1130 ]
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosome with cleaved ap-mrna (Complex from Escherichia coli K-12)
- 16s rrna (503 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6, fully modified isoform (15 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
- Ap-mrna (22 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 1)
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 2)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8peu
Q-score: 0.294
Gjorgjevikj D, Kumar N, Wang B, Hilal T, Said N, Loll B, Artsimovitch I, Sen R, Wahl MC
Nat Commun (2025) 16 pp. 550-550 [ Pubmed: 39788982 DOI: doi:10.1038/s41467-025-55897-9 ]
- Polarity suppression protein (Complex from Enterobacteria phage P4)
- Complex of e. coli transcription termination factor rho with the atp analog, atpgammas and p4 polarity suppression protein psu (Complex)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Polarity suppression protein (21 kDa, Protein from Enterobacteria phage P4)
- Magnesium ion (24 Da, Ligand)
- Transcription termination factor rho (Complex from Escherichia coli)