Cryo electron microscopy single particle of PIKfyve lipid kinase complex
Lees JA, Li P, Kumar N, Weisman LS, Reinisch KM
Mol. Cell (2020) 80 pp. 736-743 [ DOI: 10.1016/j.molcel.2020.10.003 Pubmed: 33098764 ]
Image sets:
PIKfyve/Fig4/Vac14 complex centered on Fig4 - map3
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 7k1w
Q-score: 0.102
Lees JA, Li P, Kumar N, Weisman LS, Reinisch KM
Mol Cell (2020) 80 pp. 736-743.e4 [ Pubmed: 33098764 DOI: doi:10.1016/j.molcel.2020.10.003 ]
- Pikfyve/fig4/vac14 complex (4 MDa, Complex from Homo sapiens)
- Fig4 sac homology model (105 kDa, Protein from Homo sapiens)
PIKfyve/Fig4/Vac14 complex centered on Vac14 - map1
Resolution: 5.25 Å
EM Method: Single-particle
Fitted PDBs: 7k1y
Q-score: 0.2
Lees JA, Li P, Kumar N, Weisman LS, Reinisch KM
Mol Cell (2020) 80 pp. 736-743.e4 [ Pubmed: 33098764 DOI: doi:10.1016/j.molcel.2020.10.003 ]
- Pikfyve/fig4/vac14 complex (4 MDa, Complex from Homo sapiens)
- Vac14 (45 kDa, Protein from Homo sapiens)
PIKfyve/Fig4/Vac14 complex centered on PIKfyve - map2
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 7k2v
Q-score: 0.136
Lees JA, Li P, Kumar N, Weisman LS, Reinisch KM
Mol Cell (2020) 80 pp. 736-743.e4 [ Pubmed: 33098764 DOI: doi:10.1016/j.molcel.2020.10.003 ]
- 1-phosphatidylinositol 3-phosphate 5-kinase (51 kDa, Protein from Homo sapiens)
- Pikfyve/fig4/vac14 complex (4 MDa, Complex from Homo sapiens)
- 1-phosphatidylinositol 3-phosphate 5-kinase (30 kDa, Protein from Homo sapiens)
Structure of dimeric sIgA complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6ue7
Q-score: 0.463
Kumar N, Arthur CP, Ciferri C, Matsumoto ML
Science (2020) 367 pp. 1008-1014 [ Pubmed: 32029686 DOI: doi:10.1126/science.aaz5807 ]
- Immunoglobulin heavy constant alpha 1 (26 kDa, Protein from Homo sapiens)
- Dimeric siga complex (188 kDa, Complex from Homo sapiens)
- Polymeric immunoglobulin receptor (65 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of tetrameric sIgA complex (Class 1)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ue8
Q-score: 0.4
Kumar N, Arthur CP, Ciferri C, Matsumoto ML
Science (2020) 367 pp. 1008-1014 [ Pubmed: 32029686 DOI: doi:10.1126/science.aaz5807 ]
- Polymeric immunoglobulin receptor (65 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant alpha 2 (26 kDa, Protein from Homo sapiens)
- Tetrameric siga complex (class 1) (294 kDa, Complex from Homo sapiens)
Structure of tetrameric sIgA complex (Class 2)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6ue9
Q-score: 0.158
Kumar N, Arthur CP, Ciferri C, Matsumoto ML
Science (2020) 367 pp. 1008-1014 [ Pubmed: 32029686 DOI: doi:10.1126/science.aaz5807 ]
- Polymeric immunoglobulin receptor (65 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant alpha 2 (26 kDa, Protein from Homo sapiens)
- Tetrameric siga complex (class 2) (294 kDa, Complex from Homo sapiens)
Structure of pentameric sIgA complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6uea
Q-score: 0.383
Kumar N, Arthur CP, Ciferri C, Matsumoto ML
Science (2020) 367 pp. 1008-1014 [ Pubmed: 32029686 DOI: doi:10.1126/science.aaz5807 ]
- Polymeric immunoglobulin receptor (65 kDa, Protein from Homo sapiens)
- Pentameric siga complex (347 kDa, Complex from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant alpha 2 (26 kDa, Protein from Homo sapiens)