Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8uad
Q-score: 0.598
Juraszek J, Milder FJ, Yu X, Blokland S, van Overveld D, Abeywickrema P, Tamara S, Sharma S, Rutten L, Bakkers MJG, Langedijk JPM
Pnas Nexus (2024) 3 pp. pgae462-pgae462 [ DOI: doi:10.1093/pnasnexus/pgae462 Pubmed: 39445049 ]
- Hemagglutinin ha1 chain (38 kDa, Protein from Influenza B virus)
- Hemagglutinin ha2 chain (19 kDa, Protein from Influenza B virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prefusion-stabilized influenza b hemagglutinin (Complex from Influenza B virus)
Cryo-EM structure of Prefusion RSV F (RSV220975)
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 9b2x
Q-score: 0.525
Bakkers MJG, Cox F, Koornneef A, Yu X, van Overveld D, Le L, van den Hoogen W, Vaneman J, Thoma A, Voorzaat R, Tettero L, Juraszek J, van der Fits L, Zahn R, Langedijk JPM
Nat Microbiol (2024) 9 pp. 3254-3267 [ DOI: doi:10.1038/s41564-024-01860-1 Pubmed: 39567664 ]
- Fusion glycoprotein f0 (58 kDa, Protein from Human orthopneumovirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prefusion rsv f (rsv220975) (Complex from Human metapneumovirus)
Cryo-EM structure of HMPV (MPV-2cREKR)
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8vt2
Q-score: 0.569
Bakkers MJG, Ritschel T, Tiemessen M, Dijkman J, Zuffiano AA, Yu X, van Overveld D, Le L, Voorzaat R, van Haaren MM, de Man M, Tamara S, van der Fits L, Zahn R, Juraszek J, Langedijk JPM
Nat Commun (2024) 15 pp. 6270-6270 [ DOI: doi:10.1038/s41467-024-50659-5 Pubmed: 39054318 ]
Cryo-EM structure of HMPV (MPV-2cREKR)
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8vt3
Q-score: 0.567
Bakkers MJG, Ritschel T, Tiemessen M, Dijkman J, Zuffiano AA, Yu X, van Overveld D, Le L, Voorzaat R, van Haaren MM, de Man M, Tamara S, van der Fits L, Zahn R, Juraszek J, Langedijk JPM
Nat Commun (2024) 15 pp. 6270-6270 [ DOI: doi:10.1038/s41467-024-50659-5 Pubmed: 39054318 ]
- Prefusion of hmpv (mpv-2crekr), n-fragment (8 kDa, Protein from Human metapneumovirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Prefusion of hmpv (mpv-2crekr), c-fragment (41 kDa, Protein from Human metapneumovirus)
- Prefusion of hmpv (mpv-2crekr) trimer complex (Complex from Human metapneumovirus)
Structure of Covid Spike variant deltaN135 in fully closed form
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8fu7
Q-score: 0.437
Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Melchers JM, van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs JM, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM
PLoS Pathog (2023) 19 pp. e1011308-e1011308 [ Pubmed: 37126534 DOI: doi:10.1371/journal.ppat.1011308 ]
Structure of Covid Spike variant deltaN135 with one erect RBD
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8fu8
Q-score: 0.457
Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Melchers JM, van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs JM, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM
PLoS Pathog (2023) 19 pp. e1011308-e1011308 [ Pubmed: 37126534 DOI: doi:10.1371/journal.ppat.1011308 ]
Structure of Covid Spike variant deltaN25 with one erect RBD
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8fu9
Q-score: 0.365
Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Melchers JM, van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs JM, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM
PLoS Pathog (2023) 19 pp. e1011308-e1011308 [ Pubmed: 37126534 DOI: doi:10.1371/journal.ppat.1011308 ]
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7a4n
Q-score: 0.521
Juraszek J, Rutten L, Blokland S, Bouchier P, Voorzaat R, Ritschel T, Bakkers MJG, Renault LLR, Langedijk JPM
Nat Commun (2021) 12 pp. 244-244 [ DOI: doi:10.1038/s41467-020-20321-x Pubmed: 33431842 ]
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 7ad1
Q-score: 0.532
Juraszek J, Rutten L, Blokland S, Bouchier P, Voorzaat R, Ritschel T, Bakkers MJG, Renault LLR, Langedijk JPM
Nat Commun (2021) 12 pp. 244-244 [ DOI: doi:10.1038/s41467-020-20321-x Pubmed: 33431842 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,envelope glycoprotein,spike glycoprotein,envelope glycoprotein,sars-cov-2 s protein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- S closed protein trimer (Cellular component from Severe acute respiratory syndrome coronavirus 2)