Low-dose cryo-electron ptychography of Tobacco Mosaic Virus at 6.1 mrad
Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H
bioRxiv (2024) [ DOI: 10.1101/2024.02.12.579607 ]
Image sets:
Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad
Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H
bioRxiv (2024) [ DOI: 10.1101/2024.02.12.579607 ]
Image sets:
Low-dose cryo-electron ptychography of Apoferritin at 4.0 mrad
Küçükoğlu B, Mohammed I, Guerrero-Ferreira RC, Kube M, Kube M, Radecke J, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Nazarov S, Myasnikov A, Sachse C, Müller-Caspary K, Ophus C, Stahlberg H
bioRxiv (2024) [ DOI: 10.1101/2024.02.12.579607 ]
Image sets:
Low-dose cryo-electron ptychographic reconstruction of apoferritin recorded with CSA of 4.0 mrad
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]
- Apoferritin (480 kDa, Complex from Mus musculus)
Low-dose cryo-electron ptychographic reconstruction of TMV recorded with CSA of 6.1 mrad
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]
- Tobacco mosaic virus (40 MDa, Virus from Tobacco mosaic virus)
Cryo-EM structure of mouse heavy-chain apoferritin
Resolution: 1.09 Å
EM Method: Single-particle
Fitted PDBs: 8rqb
Q-score: 0.942
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ferritin heavy chain, n-terminally processed (20 kDa, Protein from Mus musculus)
- Apoferritin from mus musculus (Complex from Mus musculus)
- Fe (iii) ion (55 Da, Ligand)
Low-dose cryo-electron ptychographic reconstruction of phi92-sheath recorded with CSA of 5.1 mrad
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ Pubmed: 39277607 DOI: doi:10.1038/s41467-024-52403-5 ]
Low-dose cryo-electron ptychographic reconstruction of phi92-capsid recorded with CSA of 5.1 mrad
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ Pubmed: 39277607 DOI: doi:10.1038/s41467-024-52403-5 ]
XBB 1.0 RBD bound to P4J15 (Local)
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 8pq2
Q-score: 0.481
Fenwick C, Turelli P, Duhoo Y, Lau K, Herate C, Marlin R, Lamrayah M, Campos J, Esteves-Leuenberger L, Farina A, Raclot C, Genet V, Fiscalini F, Cesborn J, Perez L, Dereuddre-Bosquet N, Contreras V, Lheureux K, Relouzat F, Abdelnabi R, Leyssen P, Levy Y, Pojer F, Le Grand R, Trono D, Pantaleo G
J Infect (2023) 87 pp. 524-537 [ DOI: doi:10.1016/j.jinf.2023.10.008 Pubmed: 37852477 ]
- Spike xbb.1 rbd up - p4j15 fab (local) (72 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- P4j15 fragment antigen-binding light chain (11 kDa, Protein from Homo sapiens)
- P4j15 fragment antigen-binding heavy chain (13 kDa, Protein from Homo sapiens)
- Spike protein s2' (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
XBB 1.0 RBD bound to P4J15 (Global)
Fenwick C, Turelli P, Duhoo Y, Lau K, Herate C, Marlin R, Lamrayah M, Campos J, Esteves-Leuenberger L, Farina A, Raclot C, Genet V, Fiscalini F, Cesborn J, Perez L, Dereuddre-Bosquet N, Contreras V, Lheureux K, Relouzat F, Abdelnabi R, Leyssen P, Levy Y, Pojer F, Le Grand R, Trono D, Pantaleo G
J Infect (2023) 87 pp. 524-537 [ DOI: doi:10.1016/j.jinf.2023.10.008 Pubmed: 37852477 ]