Cryo-EM structure of mouse heavy-chain apoferritin
Resolution: 1.09 Å
EM Method: Single-particle
Fitted PDBs: 8rqb
Q-score: 0.942
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]
- Ferritin heavy chain, n-terminally processed (20 kDa, Protein from Mus musculus)
- Zinc ion (65 Da, Ligand)
- Apoferritin from mus musculus (Complex from Mus musculus)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
SARS-CoV-2 XBB 1.0 closed conformation.
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8psd
Q-score: 0.562
Fenwick C, Turelli P, Duhoo Y, Lau K, Herate C, Marlin R, Lamrayah M, Campos J, Esteves-Leuenberger L, Farina A, Raclot C, Genet V, Fiscalini F, Cesborn J, Perez L, Dereuddre-Bosquet N, Contreras V, Lheureux K, Relouzat F, Abdelnabi R, Leyssen P, Levy Y, Pojer F, Le Grand R, Trono D, Pantaleo G
J Infect (2023) 87 pp. 524-537 [ Pubmed: 37852477 DOI: doi:10.1016/j.jinf.2023.10.008 ]
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD up - 1-P2G3 and 1-P5C3 Fabs (Local)
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 7qtj
Q-score: 0.344
Fenwick C, Turelli P, Ni D, Perez L, Lau K, Herate C, Marlin R, Lana E, Pellaton C, Raclot C, Esteves-Leuenberger L, Campos J, Farina A, Fiscalini F, Dereuddre-Bosquet N, Relouzat F, Abdelnabi R, Foo CS, Neyts J, Leyssen P, Levy Y, Pojer F, Stahlberg H, LeGrand R, Trono D, Pantaleo G
Nat Microbiol (2022) 7 pp. 1376-1389 [ Pubmed: 35879526 DOI: doi:10.1038/s41564-022-01198-6 ]
- P2g3 light chain (23 kDa, Protein from Homo sapiens)
- P2g3 heavy chain (24 kDa, Protein from Homo sapiens)
- P5c3 heavy chain (23 kDa, Protein from Homo sapiens)
- P5c3 light chain (23 kDa, Protein from Homo sapiens)
- Spike omicron trimer with fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Surface glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD and NTD (Local)
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7qo9
Q-score: 0.38
Ni D, Lau K, Turelli P, Raclot C, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D
bioRxiv (2021) [ DOI: doi:10.1101/2021.12.27.474250 ]
- Water (18 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,sars-cov-2 s omicron spike b.1.1.529 (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike trimer (752 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 S Omicron Spike B.1.1.529
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7qo7
Q-score: 0.389
Ni D, Lau K, Turelli P, Raclot C, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D
bioRxiv (2021) [ DOI: doi:10.1101/2021.12.27.474250 ]