RBD-1 of SARS-CoV-2 Beta spike in complex with S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcr
Q-score: 0.354
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Rbd-1 of sars-cov-2 beta spike in complex with s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with one S5D2 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wcz
Q-score: 0.256
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 beta spike in complex with one s5d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with two S5D2 Fabs
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd0
Q-score: 0.291
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex)
- Heavy chain of s5d2 fab (Complex from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S5D2 Fabs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wd7
Q-score: 0.22
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s5d2 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Heavy chain of s5d2 fab (Complex)
- Light chain of s5d2 fab (24 kDa, Protein from Mus musculus)
- Light chain of s5d2 fab (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with two s5d2 fabs (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 Beta spike SD1 in complex with S3H3 Fab
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7wd8
Q-score: 0.28
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Partial spike of sars-cov-2 beta variant (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 spike protein (Complex from Mus musculus)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (Complex from Mus musculus)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with three S3H3 Fabs
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wd9
Q-score: 0.204
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (Complex)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
SARS-CoV-2 Beta spike in complex with two S3H3 Fabs
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7wdf
Q-score: 0.188
Xu S, Wang Y, Wang Y, Zhang C, Hong Q, Gu C, Xu R, Wang T, Yang Y, Zang J, Zhou Y, Li Z, Liu Q, Zhou B, Bai L, Zhu Y, Deng Q, Wang H, Lavillette D, Wong G, Xie Y, Cong Y, Huang Z
Emerg Microbes Infect (2022) 11 pp. 351-367 [ Pubmed: 34964428 DOI: doi:10.1080/22221751.2021.2024455 ]
- Light chain of s3h3 fab (23 kDa, Protein from Mus musculus)
- Sars-cov-2 beta spike in complex with s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of s3h3 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of s3h3 fab (Complex)
- Heavy chain of s3h3 fab (23 kDa, Protein from Mus musculus)
The cryo-EM map of the MR3-Spike complex
Li T, Cai H, Yao H, Zhou B, Zhang N, van Vlissingen MF, Kuiken T, Han W, GeurtsvanKessel CH, Gong Y, Zhao Y, Shen Q, Qin W, Tian XX, Peng C, Lai Y, Wang Y, Hutter CAJ, Kuo SM, Bao J, Liu C, Wang Y, Richard AS, Raoul H, Lan J, Seeger MA, Cong Y, Rockx B, Wong G, Bi Y, Lavillette D, Li D
Nat Commun (2021) 12 pp. 4635-4635 [ Pubmed: 34330908 DOI: doi:10.1038/s41467-021-24905-z ]
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7dcc
Q-score: 0.137
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The heavy chain of 3c1 fab (24 kDa, Protein from Mus musculus)
- Complex of sarc-cov2-s protein with 3c1 fab, all the three rbds are in the up conformation and each of them associates with a 3c1 fab (Complex from Mus musculus)
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sarc-cov2-s protein (Complex)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
S-3C1-F3a structure, two RBDs are up and one RBD is down, each RBD binds with a 3C1 fab.
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7dcx
Q-score: 0.087
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ DOI: doi:10.1038/s41467-020-20465-w Pubmed: 33431876 ]
- The light chain of 3c1 fab (23 kDa, Protein from Mus musculus)
- 3c1 fab with a heavy chain and a light chain (Complex from Severe acute respiratory syndrome coronavirus 2)
- The heavy chain of 3c1 fab that binds with the up rbd (24 kDa, Protein from Mus musculus)
- Sars-cov2-s protein (Complex)
- Complex of sars-cov2-s protein with 3c1 fab, two rbds are up and one rbd is down (Complex from Mus musculus)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)