EM structure of endogenous TREX complex from S. cerevisiae
Kern C, Radon C, Wende W, Leitner A, Strasser K
RNA (2023) 29 pp. 1870-1880 [ DOI: doi:10.1261/rna.079758.123 Pubmed: 37699651 ]
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7sx3
Q-score: 0.47
Kschonsak M, Chua HC, Weidling C, Chakouri N, Noland CL, Schott K, Chang T, Tam C, Patel N, Arthur CP, Leitner A, Ben-Johny M, Ciferri C, Pless SA, Payandeh J
Nature (2022) 603 pp. 180-186 [ Pubmed: 34929720 DOI: doi:10.1038/s41586-021-04313-5 ]
- Unc79,protein unc-79 homolog,protein unc-79 homolog (285 kDa, Protein from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- Protein unc-80 homolog (366 kDa, Protein from Homo sapiens)
- Sodium leak channel non-selective protein,enhanced green fluorescent protein (234 kDa, Protein from Homo sapiens)
- Pentameric complex of the leak channel nalcn with fam155a, calmodulin, unc79 and unc80 (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Transmembrane protein fam155a (54 kDa, Protein from Homo sapiens)
Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 2/2
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7sx4
Q-score: 0.359
Kschonsak M, Chua HC, Weidling C, Chakouri N, Noland CL, Schott K, Chang T, Tam C, Patel N, Arthur CP, Leitner A, Ben-Johny M, Ciferri C, Pless SA, Payandeh J
Nature (2022) 603 pp. 180-186 [ Pubmed: 34929720 DOI: doi:10.1038/s41586-021-04313-5 ]
- Unc79,protein unc-79 homolog (285 kDa, Protein from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- Protein unc-80 homolog (366 kDa, Protein from Homo sapiens)
- Sodium leak channel non-selective protein,enhanced green fluorescent protein (234 kDa, Protein from Homo sapiens)
- Pentameric complex of the leak channel nalcn with fam155a, calmodulin, unc79 and unc80 (Complex from Homo sapiens)
- Cholesterol hemisuccinate (486 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Transmembrane protein fam155a (54 kDa, Protein from Homo sapiens)
Human cap-dependent 48S pre-initiation complex
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 6fec
Q-score: 0.116
Eliseev B, Yeramala L, Leitner A, Karuppasamy M, Raimondeau E, Huard K, Alkalaeva E, Aebersold R, Schaffitzel C
Nucleic Acids Res (2018) 46 pp. 2678-2689 [ DOI: doi:10.1093/nar/gky054 Pubmed: 29401259 ]
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (8 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (97 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (124 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 3 (45 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (25 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (27 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 beta subunit (eif2-beta) (2 kDa, Protein from Homo sapiens)
- Mrna (Complex from Homo sapiens)
- Transfer rna (75-mer) (24 kDa, RNA from Homo sapiens)
- 18s ribosomal rna (572 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s3a (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (13 kDa, Protein from Homo sapiens)
- Messenger rna (26-mer) (8 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 4b (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 1 (30 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (14 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 40s ribosomal protein s2 (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 4b (72 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- Human cap-dependent 48s translation pre-initiation complex (Complex from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- Human cap-dependent 48s translation pre-initiation complex (2 MDa, Complex)
- 40s ribosomal protein s18 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (8 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (42 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
Human cap-dependent 48S pre-initiation complex
Eliseev B, Yeramala L, Leitner A, Karuppasamy M, Raimondeau E, Huard K, Alkalaeva E, Aebersold R, Schaffitzel C
Nucleic Acids Res (2018) [ DOI: doi:10.1093/nar/gky054 Pubmed: 29401259 ]
Negative stain reconstruction of human autophagy associated protein complex, ATG2A-WIPI4
Chowdhury S, Otomo C, Leitner A, Ohashi K, Aebersold R, Lander GC, Otomo T
PNAS (2018) 115 pp. E9792-E9801 [ Pubmed: 30185561 DOI: doi:10.1073/pnas.1811874115 ]
- Complex between human atg2a and wipi4 proteins. (250 kDa, Complex from Homo sapiens)
Negative stain reconstruction of human autophagy associated protein, ATG2A
Chowdhury S, Otomo C, Leitner A, Ohashi K, Aebersold R, Lander GC, Otomo T
PNAS (2018) 115 pp. E9792-E9801 [ Pubmed: 30185561 DOI: doi:10.1073/pnas.1811874115 ]
- Human atg2a protein (200 kDa, Complex from Homo sapiens)
RCT reconstruction of CMV gHgLgO and pentameric complexes bound to highly neutralizing antibodies
Ciferri C, Chandramouli S, Leitner A, Donnarumma D, Cianfrocco MA, Gerrein R, Friedrich K, Aggarwal Y, Palladino G, Aebersold R, Norais N, Settembre EC, Carfi A
PLoS Pathog (2015) 11 pp. e1005230-e1005230 [ Pubmed: 26485028 DOI: doi:10.1371/journal.ppat.1005230 ]
- Glycoprotein h (Protein from Cytomegalovirus)
- Ghglgo bound to 3g16 neutralizing antibody (200 kDa, Sample)
- 3g16 antibody fab fragment (Protein from unidentified)
- Glycoprotein l (Protein from Cytomegalovirus)
- Glycoprotein o (Protein from Cytomegalovirus)
RCT reconstruction of glycoprotein gHgLgO in complex with neutralizing Fab fragments 3G16 and 13H11
Ciferri C, Chandramouli S, Leitner A, Donnarumma D, Cianfrocco MA, Gerrein R, Friedrich K, Aggarwal Y, Palladino G, Aebersold R, Norais N, Settembre EC, Carfi A
PLoS Pathog (2015) 11 pp. e1005230-e1005230 [ Pubmed: 26485028 DOI: doi:10.1371/journal.ppat.1005230 ]
- Glycoprotein gh/gl/go complex bound to 13h11 and 3g16 fab fragment (300 kDa, Sample)
- Glycoprotein o (300 kDa, Protein from Cytomegalovirus)
- Glycoprotein l (300 kDa, Protein from Cytomegalovirus)
- Glycoprotein h (300 kDa, Protein from Cytomegalovirus)
- 13h11 antibody fab fragment (300 kDa, Protein from unidentified)
- 3g16 antibody fab fragment (300 kDa, Protein from unidentified)
RCT reconstruction of CMV complex
Ciferri C, Chandramouli S, Leitner A, Donnarumma D, Cianfrocco MA, Gerrein R, Friedrich K, Aggarwal Y, Palladino G, Aebersold R, Norais N, Settembre EC, Carfi A
PLoS Pathog (2015) 11 pp. e1005230-e1005230 [ Pubmed: 26485028 DOI: doi:10.1371/journal.ppat.1005230 ]