Radial spoke head structure with 2-fold symmetization
Poghosyan E, Iacovache I, Faltova L, Leitner A, Yang P, Diener DR, Aebersold R, Zuber B, Ishikawa T
J Cell Sci (2020) 133 [ DOI: doi:10.1242/jcs.245233 Pubmed: 32694165 ]
- Radial spoke of cilia (1 MDa, Complex from Chlamydomonas reinhardtii)
Radial spoke from cilia (before symmetrization)
Poghosyan E, Iacovache I, Faltova L, Leitner A, Yang P, Diener DR, Aebersold R, Zuber B, Ishikawa T
J Cell Sci (2020) 133 [ DOI: doi:10.1242/jcs.245233 Pubmed: 32694165 ]
- Radial spoke of cilia (1 MDa, Complex from Chlamydomonas reinhardtii)
Human cap-dependent 48S pre-initiation complex
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 6fec
Q-score: 0.116
Eliseev B, Yeramala L, Leitner A, Karuppasamy M, Raimondeau E, Huard K, Alkalaeva E, Aebersold R, Schaffitzel C
Nucleic Acids Res (2018) 46 pp. 2678-2689 [ DOI: doi:10.1093/nar/gky054 Pubmed: 29401259 ]
- Eukaryotic translation initiation factor 3 subunit a (164 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (16 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 beta subunit (eif2-beta) (2 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (21 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit c (97 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit k (25 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit f (37 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit e (52 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (25 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit d (42 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Messenger rna (26-mer) (8 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit l (66 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (14 kDa, Protein from Homo sapiens)
- Human cap-dependent 48s translation pre-initiation complex (2 MDa, Complex)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Transfer rna (75-mer) (24 kDa, RNA from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit m (42 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Eukaryotic translation initiation factor 3 subunit h (39 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 1 (30 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (572 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 4b (Complex from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2 subunit 3 (45 kDa, Protein from Homo sapiens)
- Mrna (Complex from Homo sapiens)
- Ubiquitin-40s ribosomal protein s27a (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s20 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 3 subunit b (124 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s14 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (27 kDa, Protein from Homo sapiens)
- Human cap-dependent 48s translation pre-initiation complex (Complex from Homo sapiens)
- 40s ribosomal protein s3a (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 4b (72 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s25 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (13 kDa, Protein from Homo sapiens)
Human cap-dependent 48S pre-initiation complex
Eliseev B, Yeramala L, Leitner A, Karuppasamy M, Raimondeau E, Huard K, Alkalaeva E, Aebersold R, Schaffitzel C
Nucleic Acids Res (2018) [ DOI: doi:10.1093/nar/gky054 Pubmed: 29401259 ]
The human 26S Proteasome at 6.8 Ang.
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 5ln3
Q-score: 0.141
Wang X, Cimermancic P, Yu C, Schweitzer A, Chopra N, Engel JL, Greenberg C, Huszagh AS, Beck F, Sakata E, Yang Y, Novitsky EJ, Leitner A, Nanni P, Kahraman A, Guo X, Dixon JE, Rychnovsky SD, Aebersold R, Baumeister W, Sali A, Huang L
Mol Cell Proteomics (2017) 16 pp. 840-854 [ DOI: doi:10.1074/mcp.M116.065326 Pubmed: 28292943 ]
- Proteasome subunit beta type-4 (29 kDa, Protein from Homo sapiens)
- Human 26s proteasome (2 MDa, Complex from Homo sapiens)
- Proteasome subunit beta type-1 (26 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 2 (100 kDa, Protein from Homo sapiens)
- Proteasome subunit beta type-3 (22 kDa, Protein from Homo sapiens)
- Proteasome subunit beta type-2 (22 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-6 (27 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-3 (28 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 6a (49 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 1 (105 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 4 (49 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 11 (47 kDa, Protein from Homo sapiens)
- Proteasome subunit beta type-7 (30 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 13 (42 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 3 (61 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 12 (52 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 14 (34 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 8 (45 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 8 (39 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 7 (48 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-1 (29 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 6 (45 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 7 (37 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-5 (26 kDa, Protein from Homo sapiens)
- 26s proteasome non-atpase regulatory subunit 4 (40 kDa, Protein from Homo sapiens)
- 26s proteasome complex subunit dss1 (8 kDa, Protein from Homo sapiens)
- Proteasome subunit beta type-6 (25 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 6b (47 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-4 (29 kDa, Protein from Homo sapiens)
- 26s protease regulatory subunit 10b (44 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-2 (25 kDa, Protein from Homo sapiens)
- Proteasome subunit alpha type-7 (27 kDa, Protein from Homo sapiens)
- Proteasome subunit beta type-5 (28 kDa, Protein from Homo sapiens)
Electron cryo-microscopy of CSN-SCF-N8 complex
Mosadeghi R, Reichermeier KM, Winkler M, Schreiber A, Reitsma JM, Zhang Y, Stengel F, Cao J, Kim M, Sweredoski MJ, Hess S, Leitner A, Aebersold R, Peter M, Deshaies RJ, Enchev RI
eLife (2016) 5 [ Pubmed: 27031283 DOI: doi:10.7554/eLife.12102 ]
- Csn1 (55 kDa, Protein from Homo sapiens)
- Csn5h138a-n8_scf/skp2 (500 kDa, Sample)
- Cul1 (89 kDa, Protein from Homo sapiens)
- Csn5 (37 kDa, Protein from Homo sapiens)
- Rbx1 (12 kDa, Protein from Homo sapiens)
- Csn7b (29 kDa, Protein from Homo sapiens)
- Skp1 (Protein from Homo sapiens)
- Csn3 (47 kDa, Protein from Homo sapiens)
- Csn6 (36 kDa, Protein from Homo sapiens)
- Skp2 (Protein from Homo sapiens)
- Csn2 (51 kDa, Protein from Homo sapiens)
- Csn8 (23 kDa, Protein from Homo sapiens)
- Cks1 (9 kDa, Protein from Homo sapiens)
- Nedd8 (9 kDa, Protein from Homo sapiens)
- Csn4 (46 kDa, Protein from Homo sapiens)
Cryo-EM Structure of the 60S-Arx1-Alb1-Rei1 Complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5apo
Q-score: 0.46
Greber BJ, Gerhardy S, Leitner A, Leibundgut M, Salem M, Boehringer D, Leulliot N, Aebersold R, Panse VG, Ban N
Cell (2016) 164 pp. 91-102 [ Pubmed: 26709046 DOI: doi:10.1016/j.cell.2015.11.027 ]
- 60s-arx1-alb1-rei1 complex with c-terminal his6-tag on rei1 (2 MDa, Sample)
- Alb1 (63 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal subunit (2 MDa, Complex from Saccharomyces cerevisiae)
- Rei1 (45 kDa, Protein from Saccharomyces cerevisiae)
- Arx1 (65 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of the 60S-Arx1-Alb1-Rei1 complex (Rei1 N-terminal His6-tag)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5apn
Q-score: 0.389
Greber BJ, Gerhardy S, Leitner A, Leibundgut M, Salem M, Boehringer D, Leulliot N, Aebersold R, Panse VG, Ban N
Cell (2016) 164 pp. 91-102 [ Pubmed: 26709046 DOI: doi:10.1016/j.cell.2015.11.027 ]
- Alb1 (63 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal subunit (2 MDa, Complex from Saccharomyces cerevisiae)
- Rei1 (45 kDa, Protein from Saccharomyces cerevisiae)
- Arx1 (65 kDa, Protein from Saccharomyces cerevisiae)
- 60s-arx1-alb1-rei1 complex with n-terminal his6-tag on rei1 (2 MDa, Sample)
Cryo-EM structure of the 60S-Arx1-Rei1 complex at near-atomic resolution
Greber BJ, Gerhardy S, Leitner A, Leibundgut M, Salem M, Boehringer D, Leulliot N, Aebersold R, Panse VG, Ban N
Cell (2016) 164 pp. 91-102 [ Pubmed: 26709046 DOI: doi:10.1016/j.cell.2015.11.027 ]
- 60s-arx1-rei1 complex (2 MDa, Sample)
- Arx1 (65 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal subunit (2 MDa, Complex from Saccharomyces cerevisiae)
- Rei1 (45 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM reconstruction of the mammalian 28S mitoribosomal subunit
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5aj3
Q-score: 0.411
Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N
Science (2015) 348 pp. 303-308 [ DOI: doi:10.1126/science.aaa3872 Pubmed: 25837512 ]
- 28s mammalian mitochondrial ribosome (2 MDa, Sample)
- 28s mammalian mitochondrial ribosome subunit (1 MDa, Complex from Sus scrofa)