Cryo-EM structure of SARS-CoV-1 2P spike protein in complex with W328-6A1 IgG
Cryo-EM structure of SARS-CoV-1 2P spike protein in complex with W328-6E10 Fab
Cryo-EM structure of SARS-CoV-1 2P spike protein protomer in complex with W328-6E10 (local refine)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ipq
Q-score: 0.332
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8ipr
Q-score: 0.476
Zhu C, Shi Y, Yu J, Zhao W, Li L, Liang J, Yang X, Zhang B, Zhao Y, Gao Y, Chen X, Yang X, Zhang L, Guddat LW, Liu L, Yang H, Rao Z, Li J
Protein Cell (2023) 14 pp. 919-923 [ DOI: doi:10.1093/procel/pwad022 Pubmed: 37144855 ]
- Cyddc (Complex from Mycolicibacterium smegmatis)
- Component linked with the assembly of cytochrome' abc transporter atp-binding protein cydc (51 kDa, Protein from Mycolicibacterium smegmatis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Transmembrane atp-binding protein abc transporter cydd (53 kDa, Protein from Mycolicibacterium smegmatis)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8ips
Q-score: 0.472
Zhu C, Shi Y, Yu J, Zhao W, Li L, Liang J, Yang X, Zhang B, Zhao Y, Gao Y, Chen X, Yang X, Zhang L, Guddat LW, Liu L, Yang H, Rao Z, Li J
Protein Cell (2023) 14 pp. 919-923 [ DOI: doi:10.1093/procel/pwad022 Pubmed: 37144855 ]
- Cyddc (Complex from Escherichia coli)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydd (65 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydc (64 kDa, Protein from Escherichia coli (strain B / BL21-DE3))
Cryo-EM structure of heme transporter CydDC from Escherichia coli in the occluded ATP bound state
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ipt
Q-score: 0.456
Zhu C, Shi Y, Yu J, Zhao W, Li L, Liang J, Yang X, Zhang B, Zhao Y, Gao Y, Chen X, Yang X, Zhang L, Guddat LW, Liu L, Yang H, Rao Z, Li J
Protein Cell (2023) 14 pp. 919-923 [ DOI: doi:10.1093/procel/pwad022 Pubmed: 37144855 ]
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydd (65 kDa, Protein from Escherichia coli)
- Cyddc (Complex from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Abc transporter, cyddc cysteine exporter (cyddc-e) family, permease/atp-binding protein cydc (62 kDa, Protein from Escherichia coli)
Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three F61 Fab
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7xmx
Q-score: -0.013
Li X, Pan Y, Yin Q, Wang Z, Shan S, Zhang L, Yu J, Qu Y, Sun L, Gui F, Lu J, Jing Z, Wu W, Huang T, Shi X, Li J, Li X, Li D, Wang S, Yang M, Zhang L, Duan K, Liang M, Yang X, Wang X
Cell Discov (2022) 8 pp. 87-87 [ Pubmed: 36075908 DOI: doi:10.1038/s41421-022-00449-4 ]
- F61 heavy chain (12 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 spike in complex with f61 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- F61 light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three D2 Fab
Resolution: 3.25 Å
EM Method: Single-particle
Fitted PDBs: 7xmz
Q-score: 0.384
Li X, Pan Y, Yin Q, Wang Z, Shan S, Zhang L, Yu J, Qu Y, Sun L, Gui F, Lu J, Jing Z, Wu W, Huang T, Shi X, Li J, Li X, Li D, Wang S, Yang M, Zhang L, Duan K, Liang M, Yang X, Wang X
Cell Discov (2022) 8 pp. 87-87 [ Pubmed: 36075908 DOI: doi:10.1038/s41421-022-00449-4 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D2 light chain (11 kDa, Protein from Homo sapiens)
- D2 heavy chain (13 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 spike in complex with d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (143 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 7xst
Q-score: 0.299
Li X, Pan Y, Yin Q, Wang Z, Shan S, Zhang L, Yu J, Qu Y, Sun L, Gui F, Lu J, Jing Z, Wu W, Huang T, Shi X, Li J, Li X, Li D, Wang S, Yang M, Zhang L, Duan K, Liang M, Yang X, Wang X
Cell Discov (2022) 8 pp. 87-87 [ Pubmed: 36075908 DOI: doi:10.1038/s41421-022-00449-4 ]
- F61 heavy chain (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein (134 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron spike in complex with f61 and d2 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- D2 light chain (11 kDa, Protein from Homo sapiens)
- D2 heavy chain (13 kDa, Protein from Homo sapiens)
- F61 light chain (11 kDa, Protein from Homo sapiens)