PSI-FCPI-L in Thalassiosira pseudonana
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8zeh
Q-score: 0.566
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ DOI: doi:10.1111/jipb.13816 Pubmed: 39670505 ]
- Tp-lhcr20 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein (19 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein (23 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein (19 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Tp-lhcr18 (16 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll c1 (610 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein, lhcr type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll a (893 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- Tp-psi-fcpi-l (Complex from Thalassiosira pseudonana CCMP1335)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Tp-PSI-FCPI-S in Thalassiosira pseudonana
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8zet
Q-score: 0.485
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ DOI: doi:10.1111/jipb.13816 Pubmed: 39670505 ]
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Tp-psi-fcpi-s (Complex from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll a (893 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Structure of PSII-ACPII supercomplex from cryptophyte algae
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8wb4
Q-score: 0.539
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G
Nat Commun (2024) 15 pp. 4535-4535 [ Pubmed: 38806516 DOI: doi:10.1038/s41467-024-48878-x ]
- Acpii-3 (24 kDa, Protein from Chroomonas placoidea)
- Acpii-6 (23 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein q (1 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{r},4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii protein d1 (39 kDa, Protein from Chroomonas placoidea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chroomonas placoidea)
- Ccpii-s (30 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein k (5 kDa, Protein from Chroomonas placoidea)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein j (3 kDa, Protein from Chroomonas placoidea)
- Acpii-2 (23 kDa, Protein from Chroomonas placoidea)
- Acpii-1 (25 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein i (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein g (5 kDa, Protein from Chroomonas placoidea)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein u (15 kDa, Protein from Chroomonas placoidea)
- Acpii-4 (23 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein o (34 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Chroomonas placoidea)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Acpii-5 (23 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Photosystem ii reaction center protein w (11 kDa, Protein from Chroomonas placoidea)
- Bicarbonate ion (61 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chroomonas placoidea)
- Pheophytin a (871 Da, Ligand)
- Structure of psii-acpii supercomplex from cryptophyte algae (Complex from Chroomonas placoidea)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chroomonas placoidea)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center m (11 kDa, Protein from Chroomonas placoidea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chroomonas placoidea)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii reaction center protein r (2 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center x protein (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii d2 protein (39 kDa, Protein from Chroomonas placoidea)
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem ii cytochrome c550 (17 kDa, Protein from Chroomonas placoidea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Structure of ACPII-CCPII from cryptophyte algae
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8xkl
Q-score: 0.49
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G
Nat Commun (2024) 15 pp. 4535-4535 [ Pubmed: 38806516 DOI: doi:10.1038/s41467-024-48878-x ]
- Acpii-3 (24 kDa, Protein from Chroomonas placoidea)
- Acpii-2 (23 kDa, Protein from Chroomonas placoidea)
- Acpii-5 (23 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- Acpii-1 (25 kDa, Protein from Chroomonas placoidea)
- Acpii-6 (23 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{r},4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem ii reaction center protein g (5 kDa, Protein from Chroomonas placoidea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Acpii-4 (23 kDa, Protein from Chroomonas placoidea)
- Chlorophyll a (893 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Ccpii-s (30 kDa, Protein from Chroomonas placoidea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Structure of acpii-ccpii from cryptophyte algae (Complex from Chroomonas placoidea)
PSI-AcpPCI supercomplex from Amphidinium carterae
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8jw0
Q-score: 0.51
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ Pubmed: 38319970 DOI: doi:10.1073/pnas.2315476121 ]
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-17, acppci-17 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psaa (70 kDa, Protein from Amphidinium carterae)
- Photosystem i psab (67 kDa, Protein from Amphidinium carterae)
- Photosystem i psar (14 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Amphidinium carterae)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Amphidinium carterae)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (19 kDa, Protein from Amphidinium carterae)
- Photosystem i psal (27 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-1, acppci-1 (15 kDa, Protein from Amphidinium carterae)
- Photosystem i psaf (20 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (18 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (19 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (23 kDa, Protein from Amphidinium carterae)
- Photosystem i psaj (7 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-16, acppci-16 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psac (9 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psad (28 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Amphidinium carterae)
- Photosystem i psai (14 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (18 kDa, Protein from Amphidinium carterae)
- Chlorophyll a (893 Da, Ligand)
- Psi-acppci supercomplex from amphidinium carterae (Complex from Amphidinium carterae)
- Photosystem i psam (9 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Amphidinium carterae)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i psae (8 kDa, Protein from Amphidinium carterae)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Peridinin (630 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Amphidinium carterae)
PSI-AcpPCI supercomplex from Symbiodinium
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8jze
Q-score: 0.518
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ Pubmed: 38319970 DOI: doi:10.1073/pnas.2315476121 ]
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
- Photosystem i unk (6 kDa, Protein from Symbiodinium)
- Photosystem i psaf (20 kDa, Protein from Symbiodinium)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
- Photosystem i psab (74 kDa, Protein from Symbiodinium)
- Photosystem i unk (11 kDa, Protein from Symbiodinium)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Photosystem i psae (8 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
- Photosystem i psad (24 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Symbiodinium)
- Photosystem i psai (13 kDa, Protein from Symbiodinium)
- Photosystem i psaj (11 kDa, Protein from Symbiodinium)
- Photosystem i psam (8 kDa, Protein from Symbiodinium)
- Photosystem i psal (27 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
- Photosystem i psaa (75 kDa, Protein from Symbiodinium)
- Photosystem i psac (9 kDa, Protein from Symbiodinium)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Symbiodinium)
- Photosystem i psar (15 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Peridinin (630 Da, Ligand)
PSI-AcpPCI supercomplex from Symbiodinium
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jzf
Q-score: 0.537
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ Pubmed: 38319970 DOI: doi:10.1073/pnas.2315476121 ]
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
- Photosystem i unk (6 kDa, Protein from Symbiodinium)
- Photosystem i psaf (20 kDa, Protein from Symbiodinium)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
- Photosystem i psab (74 kDa, Protein from Symbiodinium)
- Photosystem i unk (11 kDa, Protein from Symbiodinium)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Photosystem i psae (8 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
- Photosystem i psad (24 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
- Photosystem i psai (13 kDa, Protein from Symbiodinium)
- Photosystem i psaj (11 kDa, Protein from Symbiodinium)
- Photosystem i psam (8 kDa, Protein from Symbiodinium)
- Photosystem i psal (27 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
- Photosystem i psaa (75 kDa, Protein from Symbiodinium)
- Photosystem i psac (9 kDa, Protein from Symbiodinium)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
- Iron/sulfur cluster (351 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i psar (15 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Peridinin (630 Da, Ligand)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8j5k
Q-score: 0.504
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ DOI: doi:10.1038/s41467-023-44055-8 Pubmed: 38071196 ]
- Psb34 (2 kDa, Protein from Stephanocyclus meneghinianus)
- Fe (ii) ion (55 Da, Ligand)
- Fcpii-h1, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cm-psii-fcpii (Complex from Stephanocyclus meneghinianus)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Psbe (8 kDa, Protein from Stephanocyclus meneghinianus)
- Psbd (37 kDa, Protein from Stephanocyclus meneghinianus)
- Psbx (3 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-j, fucoxanthin chlorophyll a/c binding protein (17 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Psby (3 kDa, Protein from Stephanocyclus meneghinianus)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Psbb (53 kDa, Protein from Stephanocyclus meneghinianus)
- Psbw (5 kDa, Protein from Stephanocyclus meneghinianus)
- Bicarbonate ion (61 Da, Ligand)
- Psbz (6 kDa, Protein from Stephanocyclus meneghinianus)
- Pheophytin a (871 Da, Ligand)
- Psbo (26 kDa, Protein from Stephanocyclus meneghinianus)
- Psbt (3 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-h2, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-g, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-k, fucoxanthin chlorophyll a/c binding protein (13 kDa, Protein from Stephanocyclus meneghinianus)
- Chlorophyll a (893 Da, Ligand)
- Psbl (4 kDa, Protein from Stephanocyclus meneghinianus)
- Psbm (4 kDa, Protein from Stephanocyclus meneghinianus)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Psbv (14 kDa, Protein from Stephanocyclus meneghinianus)
- Psbi (3 kDa, Protein from Stephanocyclus meneghinianus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Psbf (3 kDa, Protein from Stephanocyclus meneghinianus)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Fcpii-i, fucoxanthin chlorophyll a/c binding protein (23 kDa, Protein from Stephanocyclus meneghinianus)
- Psbh (7 kDa, Protein from Stephanocyclus meneghinianus)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psba (36 kDa, Protein from Stephanocyclus meneghinianus)
- Psbu (10 kDa, Protein from Stephanocyclus meneghinianus)
- Psbc (49 kDa, Protein from Stephanocyclus meneghinianus)
- Psbk (4 kDa, Protein from Stephanocyclus meneghinianus)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psbq' (16 kDa, Protein from Stephanocyclus meneghinianus)
- Psbj (3 kDa, Protein from Stephanocyclus meneghinianus)
Structure of FCP trimer in Cyclotella meneghiniana
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8j7z
Q-score: 0.591
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ DOI: doi:10.1038/s41467-023-44055-8 Pubmed: 38071196 ]
- Chlorophyll c1 (610 Da, Ligand)
- Cm-fcp-trimer (Complex from Stephanocyclus meneghinianus)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Fcp (19 kDa, Protein from Stephanocyclus meneghinianus)
- Chlorophyll c2 (608 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
Structure of PSII-FCPII-G/H complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8w4o
Q-score: 0.531
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ DOI: doi:10.1038/s41467-023-44055-8 Pubmed: 38071196 ]
- Fcpii-h2, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cm-psii-fcpii-g/h (Complex from Stephanocyclus meneghinianus)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fcpii-h1, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Chlorophyll a (893 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fcpii-g, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)