Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8iwh
Q-score: 0.541
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR
Sci Adv (2023) 9 pp. eadi8446-eadi8446 [ DOI: doi:10.1126/sciadv.adi8446 Pubmed: 37878698 ]
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 6 (20 kDa, Protein from Thalassiosira pseudonana)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii protein d1 (36 kDa, Protein from Thalassiosira pseudonana)
- Oxygen-evolving enhancer protein 1 (32 kDa, Protein from Thalassiosira pseudonana)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem ii reaction center x protein (3 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein k (4 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin-chlorophyll a-c binding protein, plastid (21 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c light-harvesting protein, major type (20 kDa, Protein from Thalassiosira pseudonana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem ii psb31 protein domain-containing protein (18 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein z (6 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbq. (22 kDa, Protein from Thalassiosira pseudonana)
- Fe (ii) ion (55 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Thalassiosira pseudonana)
- Ps ii complex 12 kda extrinsic protein (15 kDa, Protein from Thalassiosira pseudonana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Structure of psii-fcpii supercomplex containing monomeric lhcx and dimeric fcpii from thalassiosira pseudonana (Complex from Thalassiosira pseudonana)
- Photosystem ii reaction center protein l (4 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center m protein, plastid (12 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbn. (2 kDa, Protein from Thalassiosira pseudonana)
- Pheophytin a (871 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Thalassiosira pseudonana)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 5 (21 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii subunit, psbw (6 kDa, Protein from Thalassiosira pseudonana)
- Chlorophyll a (893 Da, Ligand)
- Cytochrome c-550 (17 kDa, Protein from Thalassiosira pseudonana)
- Beta-carotene (536 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin chl a/c protein, lhca clade (24 kDa, Protein from Thalassiosira pseudonana)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein h (7 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein i (3 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein j (4 kDa, Protein from Thalassiosira pseudonana)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Thalassiosira pseudonana)
- Chloride ion (35 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Thalassiosira pseudonana)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin chlorophyll a/c protein-li818 clade (21 kDa, Protein from Thalassiosira pseudonana)
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8j0d
Q-score: 0.498
Feng Y, Li Z, Li X, Shen L, Liu X, Zhou C, Zhang J, Sang M, Han G, Yang W, Kuang T, Wang W, Shen JR
Sci Adv (2023) 9 pp. eadi8446-eadi8446 [ Pubmed: 37878698 DOI: doi:10.1126/sciadv.adi8446 ]
- Fucoxanthin chlorophyll a/c protein 6 (17 kDa, Protein from Thalassiosira pseudonana)
- Fucoxanthin-chlorophyll a-c binding protein, plastid (17 kDa, Protein from Thalassiosira pseudonana)
- Chlorophyll c1 (610 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- M1 local refinement in the psii-fcpii from the thalassiosira pseudonana at 3.19 angstrom (Complex from Thalassiosira pseudonana)
- Chlorophyll a (893 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- Fucoxanthin chl a/c protein, lhca clade (24 kDa, Protein from Thalassiosira pseudonana)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c protein 5 (18 kDa, Protein from Thalassiosira pseudonana)
Structure of S1PR2-heterotrimeric G13 signaling complex
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 7t6b
Q-score: 0.506
Chen H, Chen K, Huang W, Staudt LM, Cyster JG, Li X
Sci Adv (2022) 8 pp. eabn0067-eabn0067 [ Pubmed: 35353559 DOI: doi:10.1126/sciadv.abn0067 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein subunit alpha-13 (42 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (39 kDa, Protein from Homo sapiens)
- (2s,3r,4e)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate (379 Da, Ligand)
- Scfv16 (27 kDa, Protein from Mus musculus)
- Structure of s1pr2-heterotrimeric g13 signaling complex (Complex from Homo sapiens)
- Sphingosine 1-phosphate receptor 2 (39 kDa, Protein from Homo sapiens)
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 7n4u
Q-score: 0.467
Long T, Liu Y, Qin Y, DeBose-Boyd RA, Li X
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abh3997 Pubmed: 34407950 ]
- (2r)-2,5,7,8-tetramethyl-2-[(4r,8r)-4,8,12-trimethyltridecyl]chroman-6-ol (430 Da, Ligand)
- Isoform 2 of npc1-like intracellular cholesterol transporter 1 (145 kDa, Protein from Homo sapiens)
- Npc1l1 apo state (Cell from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Structure of cholesterol-bound human NPC1L1
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 7n4v
Q-score: 0.453
Long T, Liu Y, Qin Y, DeBose-Boyd RA, Li X
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abh3997 Pubmed: 34407950 ]
- Isoform 2 of npc1-like intracellular cholesterol transporter 1 (145 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human npc1l1 supplemented with cholesterol (Cellular component from Homo sapiens)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Structure of human NPC1L1 mutant-W347R
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7n4x
Q-score: 0.525
Long T, Liu Y, Qin Y, DeBose-Boyd RA, Li X
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abh3997 Pubmed: 34407950 ]
- Isoform 2 of npc1-like intracellular cholesterol transporter 1 (145 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human npc1l1 mutant-w347r (Cellular component from Homo sapiens)
Structure of M-6-P/IGFII Receptor at pH 4.5
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 6um1
Q-score: 0.401
Wang R, Qi X, Schmiege P, Coutavas E, Li X
Sci Adv (2020) 6 pp. eaaz1466- [ DOI: doi:10.1126/sciadv.aaz1466 ]
- Igfiir (Complex from Bos taurus)
- Cation-independent mannose-6-phosphate receptor (274 kDa, Protein from Bos taurus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of M-6-P/IGFII Receptor and IGFII complex
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 6um2
Q-score: 0.356
Wang R, Qi X, Schmiege P, Coutavas E, Li X
Sci Adv (2020) 6 pp. eaaz1466- [ DOI: doi:10.1126/sciadv.aaz1466 ]
- Igfiir and igfii complex (Complex)
- Cation-independent mannose-6-phosphate receptor (274 kDa, Protein from Bos taurus)
- Insulin-like growth factor ii (Complex from Homo sapiens)
- Insulin-like growth factor ii (7 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cation-independent mannose-6-phosphate receptor (Complex from Bos taurus)