Tp-PSI-FCPI-S in Thalassiosira pseudonana
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8zet
Q-score: 0.485
Feng Y, Li Z, Yang Y, Shen L, Li X, Liu X, Zhang X, Zhang J, Ren F, Wang Y, Liu C, Han G, Wang X, Kuang T, Shen JR, Wang W
J Integr Plant Biol (2024) [ DOI: doi:10.1111/jipb.13816 Pubmed: 39670505 ]
- Photosystem i reaction center subunit ii (14 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Tp-psi-fcpi-s (Complex from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein, major type (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (13 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Pt17531-like protein (18 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll c1 (610 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Chlorophyll a (893 Da, Ligand)
- Tp-redcap (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Tp-psar (9 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
Cryo-EM structure of NRG1A(LRR) in complex with EDS1-SAG101-(ADPr-ATP)
Huang S, Wang J, Song R, Jia A, Xiao Y, Sun Y, Wang L, Mahr D, Wu Z, Han Z, Li X, Parker JE, Chai J
Nature (2025) [ DOI: doi:10.1038/s41586-024-08521-7 ]
- Probable disease resistance protein at5g66900 (46 kDa, Protein from Arabidopsis thaliana)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Protein eds1 (70 kDa, Protein from Arabidopsis thaliana)
- Ternary complex of nrg1a(lrr) with eds1-sag101-(adpr-atp) (Complex from Arabidopsis)
- Senescence-associated carboxylesterase 101 (61 kDa, Protein from Arabidopsis thaliana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
The structure of Candida albicans Cdr1 in fluconazole-bound state
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9iul
Q-score: 0.567
Peng Y, Lu Y, Sun H, Ma J, Li X, Han X, Fang Z, Tan J, Qiu Y, Qu T, Yin M, Yan Z
Nat Commun (2024) 15 pp. 7722-7722 [ Pubmed: 39242571 DOI: doi:10.1038/s41467-024-52107-w ]
- 2-(2,4-difluorophenyl)-1,3-di(1h-1,2,4-triazol-1-yl)propan-2-ol (306 Da, Ligand)
- Pip2(20:4/18:0) (1 kDa, Ligand)
- Pleiotropic abc efflux transporter of multiple drugs cdr1 (170 kDa, Protein from Candida albicans SC5314)
- The cryo-em structure of candida albicans cdr1 in fluconazole-bound state (Complex from Candida albicans SC5314)
Cryo-EM structure of a bacterial protein
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8wiv
Q-score: 0.411
Yu G, Liao F, Li X, Li Z, Zhang H
To Be Published
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Cryo-em structure of a bacterial protein (400 kDa, Complex from Paenibacillus sp. 453mf)
- Helicase hera central domain-containing protein (77 kDa, Protein from Paenibacillus sp. 453mf)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of a bacterial protein
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8wj3
Q-score: 0.384
Yu G, Liao F, Li X, Li Z, Zhang H
To Be Published
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of a bacterial protein (400 kDa, Complex from Paenibacillus sp. 453mf)
- Helicase hera central domain-containing protein (77 kDa, Protein from Paenibacillus sp. 453mf)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
Cryo-EM structure of a bacterial protein
Yu G, Liao F, Li X, Li Z, Zhang H
To Be Published
- Cryo-em structure of a bacterial protein (400 kDa, Complex from Paenibacillus sp. 453mf)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Helicase hera central domain-containing protein (77 kDa, Protein from Paenibacillus sp. 453mf)
- Magnesium ion (24 Da, Ligand)
EB-bound E46K alpha-synuclein fibrils
Liu K, Tao Y, Zhao Q, Xia W, Li X, Zhang S, Yao Y, Xiang H, Han C, Tan L, Sun B, Li D, Li A, Liu C
PNAS (2024) 121 pp. e2321633121-e2321633121 [ Pubmed: 39172784 DOI: doi:10.1073/pnas.2321633121 ]
- Eb-bound e46k alpha-synuclein fibril (Complex from Homo sapiens)
- 4-azanyl-6-[[4-[4-[(~{e})-(8-azanyl-1-oxidanyl-5,7-disulfo-naphthalen-2-yl)diazenyl]-3-methyl-phenyl]-2-methyl-phenyl]diazenyl]-5-oxidanyl-naphthalene-1,3-disulfonic acid (872 Da, Ligand)
- Alpha-synuclein (14 kDa, Protein from Homo sapiens)
CR-bound E46K alpha-synuclein fibrils
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8x7m
Q-score: 0.115
PiB-bound E46K mutanted alpha-synuclein fibrils
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 8x7o
Q-score: 0.464
Liu K, Tao Y, Zhao Q, Xia W, Li X, Zhang S, Yao Y, Xiang H, Han C, Tan L, Sun B, Li D, Li A, Liu C
PNAS (2024) 121 pp. e2321633121-e2321633121 [ Pubmed: 39172784 DOI: doi:10.1073/pnas.2321633121 ]
- Pib-bound e46k mutated alpha-synuclein fibril (Complex from Homo sapiens)
- 2-[4-(methylamino)phenyl]-1,3-benzothiazol-6-ol (256 Da, Ligand)
- Alpha-synuclein (14 kDa, Protein from Homo sapiens)
Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at post-state II
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8yhe
Q-score: 0.506
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ DOI: doi:10.1038/s41586-024-07815-0 Pubmed: 39143216 ]
- Rna (46-mer) (15 kDa, RNA from metagenome)
- Protein structure (Complex from metagenome)
- Protein structure (70 kDa, Protein from metagenome)
- Protein structure (22 kDa, Protein from metagenome)
- Rna (29-mer) (16 kDa, RNA from metagenome)
- Protein structure (27 kDa, Protein from metagenome)
- Zinc ion (65 Da, Ligand)