Cryo-EM structure of V-ATPase from bovine brain, state 1
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 6xbw
Q-score: 0.479
Wang R, Long T, Hassan A, Wang J, Sun Y, Xie XS, Li X
Nat Commun (2020) 11 pp. 3921-3921 [ Pubmed: 32764564 DOI: doi:10.1038/s41467-020-17762-9 ]
- V-type proton atpase subunit e 2 (9 kDa, Protein from Bos taurus)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- V-type proton atpase subunit s1 (51 kDa, Protein from Bos taurus)
- V-type proton atpase subunit h (54 kDa, Protein from Bos taurus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ribonuclease kappa (11 kDa, Protein from Bos taurus)
- V-type proton atpase subunit f (13 kDa, Protein from Bos taurus)
- V-type proton atpase subunit g (13 kDa, Protein from Bos taurus)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Bos taurus)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Bos taurus)
- V-type proton atpase subunit c 1 (44 kDa, Protein from Bos taurus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Bos taurus)
- Oleic acid (282 Da, Ligand)
- Renin receptor (39 kDa, Protein from Bos taurus)
- V-type proton atpase subunit d (28 kDa, Protein from Bos taurus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- V-type proton atpase subunit a (96 kDa, Protein from Bos taurus)
- V-type proton atpase subunit d 1 (40 kDa, Protein from Bos taurus)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Bos taurus)
- Cryo-em structure of v-atpase complex from bovine brain, state 1 (Complex from Bos taurus)
Respiratory Complex CIII2CIV2SOD2 from Mycobacterium smegmatis
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6adq
Q-score: 0.458
Gong H, Li J, Xu A, Tang Y, Ji W, Gao R, Wang S, Yu L, Tian C, Li J, Yen HY, Man Lam S, Shui G, Yang X, Sun Y, Li X, Jia M, Yang C, Jiang B, Lou Z, Robinson CV, Wong LL, Guddat LW, Sun F, Wang Q, Rao Z
Science (2018) 362 [ Pubmed: 30361386 DOI: doi:10.1126/science.aat8923 ]
- Cytochrome bc1 complex cytochrome c subunit (30 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit 2 (38 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit ctaj (8 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Heme-a (852 Da, Ligand)
- Prokaryotic respiratory supercomplex associate factor 1 prsaf1 (11 kDa, Protein from Mycobacterium smegmatis MC2 51)
- (2s)-1-(hexadecanoyloxy)propan-2-yl (10s)-10-methyloctadecanoate (594 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Rieske iron-sulfur protein qcra (46 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase polypeptide 4 (15 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Ubiquinol-cytochrome c reductase cytochrome b subunit (60 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Uncharacterized protein msmeg_4692/msmei_4575 (15 kDa, Protein from Mycobacterium smegmatis MC2 51)
- (2r)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (e)-octadec-9-enoate (717 Da, Ligand)
- Menaquinone-9 (785 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Lpqe protein (19 kDa, Protein from Mycobacterium smegmatis MC2 51)
- (2r)-2-(hexadecanoyloxy)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9s)-9-methyloctadecanoate (853 Da, Ligand)
- Superoxide dismutase in complex with bcc-aa3 type ciii-civ supercomplex from mycobacterium smegmatis (800 kDa, Complex from Mycobacterium smegmatis MC2 51)
- Heme c (618 Da, Ligand)
- Superoxide dismutase [cu-zn] (23 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit 1 (64 kDa, Protein from Mycobacterium smegmatis MC2 51)
- Cytochrome c oxidase subunit 3 (22 kDa, Protein from Mycobacterium smegmatis MC2 51)