Cryo-EM structure of NHEJ super-complex (dimer)
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 7nfc
Q-score: 0.2
Chaplin AK, Hardwick SW, Stavridi AK, Buehl CJ, Goff NJ, Ropars V, Liang S, De Oliveira TM, Chirgadze DY, Meek K, Charbonnier JB, Blundell TL
Mol Cell (2021) 81 pp. 3400-3409 [ Pubmed: 34352203 DOI: doi:10.1016/j.molcel.2021.07.005 ]
- Dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-pkcs (471 kDa, Protein from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit (Cellular component from Homo sapiens)
- Dna ligase 4 (104 kDa, Protein from Homo sapiens)
- Non-homologous end-joining factor 1 (33 kDa, Protein from Homo sapiens)
- Dna repair protein xrcc4 (38 kDa, Protein from Homo sapiens)
- Repair protein and ligase (Cellular component from Homo sapiens)
- Nhej super-complex (dimer) (1 MDa, Cellular component)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (Cellular component from Homo sapiens)
- Dna (28-mer) (8 kDa, DNA from Homo sapiens)
- Dna (27-mer) (8 kDa, DNA from Homo sapiens)
- Dna (27-mer) (8 kDa, DNA from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing proteins 5 and 6 (Cellular component from Homo sapiens)
Cryo-EM structure of NHEJ super-complex (monomer)
Resolution: 4.29 Å
EM Method: Single-particle
Fitted PDBs: 7nfe
Q-score: 0.203
Chaplin AK, Hardwick SW, Stavridi AK, Buehl CJ, Goff NJ, Ropars V, Liang S, De Oliveira TM, Chirgadze DY, Meek K, Charbonnier JB, Blundell TL
Mol Cell (2021) 81 pp. 3400-3409 [ Pubmed: 34352203 DOI: doi:10.1016/j.molcel.2021.07.005 ]
- Dna-dependent protein kinase catalytic subunit (Cellular component from Homo sapiens)
- Dna ligase 4 (104 kDa, Protein from Homo sapiens)
- Non-homologous end-joining factor 1 (33 kDa, Protein from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit (472 kDa, Protein from Homo sapiens)
- Dna repair protein xrcc4 (38 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*ap*ap*tp*ap*ap*ap*cp*tp*ap*ap*ap*ap*ap*cp*tp*ap*tp*tp*ap*tp*tp*ap*tp*g)-3') (7 kDa, DNA from Homo sapiens)
- Non-homologous end-joining factor 1,dna repair protein xrcc4, dna ligase 4 (Cellular component from Homo sapiens)
- X-ray repair cross-complementing protein 6 and 5 (Cellular component from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (Cellular component from Homo sapiens)
- Nhej super-complex (monomer) (800 kDa, Cellular component)
- Dna (5'-d(p*tp*ap*ap*tp*ap*ap*tp*ap*gp*tp*tp*tp*tp*tp*ap*gp*tp*tp*tp*ap*tp*tp*ap*g)-3') (7 kDa, DNA from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PKcs (State 2)
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 6zfp
Q-score: 0.472
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna-pkcs (470 kDa, Cellular component from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs,dna-pkcs (472 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PKcs (State 1)
Resolution: 3.92 Å
EM Method: Single-particle
Fitted PDBs: 6zh2
Q-score: 0.379
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- Dna-pkcs (state 1) (470 kDa, Cellular component from Homo sapiens)
Cryo-EM structure of DNA-PKcs (State 3)
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 6zh4
Q-score: 0.398
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna-pkcs (470 kDa, Cellular component from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
Cryo-EM structure of DNA-PKcs:Ku80ct194
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 6zh6
Q-score: 0.335
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (Cellular component from Homo sapiens)
- Dna-pkcs in complex with ku80 c-terminal domain (480 kDa, Cellular component)
- X-ray repair cross-complementing protein 5 (21 kDa, Protein from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (Cellular component from Homo sapiens)
Cryo-EM structure of DNA-PKcs:DNA
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 6zh8
Q-score: 0.277
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna (5'-d(p*ap*gp*tp*tp*tp*tp*tp*ap*gp*tp*t)-3') (3 kDa, DNA from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- Dna-pkcs (Cellular component from Homo sapiens)
- Dna-pkcs bound to dna (480 kDa, Cellular component)
- Dna (5'-d(p*ap*cp*tp*ap*ap*ap*ap*a)-3') (2 kDa, DNA from Homo sapiens)
- Dna (Cellular component from Homo sapiens)
Cryo-EM structure of DNA-PK monomer
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 6zha
Q-score: 0.338
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna (7 kDa, DNA from Homo sapiens)
- Dna (Complex from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit (Complex from Homo sapiens)
- X-ray repair cross-complementing protein 5+6 (Complex from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (7 kDa, DNA from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- Dna-pk monomer (640 kDa, Complex)
Cryo-EM structure of DNA-PK dimer
Resolution: 7.24 Å
EM Method: Single-particle
Fitted PDBs: 6zhe
Q-score: 0.195
Chaplin AK, Hardwick SW, Liang S, Kefala Stavridi A, Hnizda A, Cooper LR, De Oliveira TM, Chirgadze DY, Blundell TL
Nat Struct Mol Biol (2021) 28 pp. 13-19 [ DOI: doi:10.1038/s41594-020-00517-x Pubmed: 33077952 ]
- Dna-dependent protein kinase catalytic subunit (Cellular component from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit,dna-pkcs (472 kDa, Protein from Homo sapiens)
- Dna (26-mer) (8 kDa, DNA from Homo sapiens)
- Dna (28-mer) (8 kDa, DNA from Homo sapiens)
- Dna-pk dimer (1 MDa, Cellular component)
- Dna (27-mer) (8 kDa, DNA from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna (Cellular component from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing proteins 5 and 6 (Cellular component from Homo sapiens)