CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7my2
Q-score: 0.467
Xu J, Xu K, Jung S, Conte A, Lieberman J, Muecksch F, Lorenzi JCC, Park S, Schmidt F, Wang Z, Huang Y, Luo Y, Nair MS, Wang P, Schulz JE, Tessarollo L, Bylund T, Chuang GY, Olia AS, Stephens T, Teng IT, Tsybovsky Y, Zhou T, Munster V, Ho DD, Hatziioannou T, Bieniasz PD, Nussenzweig MC, Kwong PD, Casellas R
Nature (2021) 595 pp. 278-282 [ Pubmed: 34098567 DOI: doi:10.1038/s41586-021-03676-z ]
- Nanobody nb30 (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2 spike (Complex)
- Sars-cov2 spike in complex with nanobody nb30 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody nb30 (14 kDa, Protein from Mus musculus)
CryoEM structure of neutralizing nanobody Nb12 in complex with SARS-CoV2 spike
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7my3
Q-score: 0.491
Xu J, Xu K, Jung S, Conte A, Lieberman J, Muecksch F, Lorenzi JCC, Park S, Schmidt F, Wang Z, Huang Y, Luo Y, Nair MS, Wang P, Schulz JE, Tessarollo L, Bylund T, Chuang GY, Olia AS, Stephens T, Teng IT, Tsybovsky Y, Zhou T, Munster V, Ho DD, Hatziioannou T, Bieniasz PD, Nussenzweig MC, Kwong PD, Casellas R
Nature (2021) 595 pp. 278-282 [ Pubmed: 34098567 DOI: doi:10.1038/s41586-021-03676-z ]
- Nanobody nb12 (13 kDa, Protein from Mus musculus)
- Nanobody nb12 (Complex from Mus musculus)
- Sars-cov2 spike in complex with nanobody nb12 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2 spike (Complex)
Xia S, Zhang Z, Magupalli VG, Pablo JL, Dong Y, Vora SM, Wang L, Fu TM, Jacobson MP, Greka A, Lieberman J, Ruan J, Wu H
Nature (2021) 593 pp. 607-611 [ DOI: doi:10.1038/s41586-021-03478-3 Pubmed: 33883744 ]
- Pore-forming protein gasdermin-d (1 MDa, Complex from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6vfe
Q-score: 0.358
Xia S, Zhang Z, Magupalli VG, Pablo JL, Dong Y, Vora SM, Wang L, Fu TM, Jacobson MP, Greka A, Lieberman J, Ruan J, Wu H
Nature (2021) 593 pp. 607-611 [ DOI: doi:10.1038/s41586-021-03478-3 Pubmed: 33883744 ]
- Pore-forming protein gasdermin-d (1 MDa, Complex from Homo sapiens)
- Gasdermin-d, n-terminal (26 kDa, Protein from Homo sapiens)
SARS-COV-2 nsp1 in complex with human 40S ribosome
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7k5i
Q-score: 0.57
Shi M, Wang L, Fontana P, Vora S, Zhang Y, Fu TM, Lieberman J, Wu H
bioRxiv (2020) [ Pubmed: 32995777 DOI: doi:10.1101/2020.09.18.302901 ]
- 40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
- Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
- Human 40s ribosome (Complex from Homo sapiens)
- 40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 nsp1 and human 40s ribosome (Complex)
- 40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27a (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
- Host translation inhibitor nsp1 (19 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
- Sars-cov-2 nsp1 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 40s ribosomal rrna18s (602 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
Cryo-EM structure of the Gasdermin A3 membrane pore
Ruan J, Xia S, Liu X, Lieberman J, Wu H
Nature (2018) [ Pubmed: 29695864 DOI: doi:10.1038/s41586-018-0058-6 ]
- Gasdermin a3 (Protein from Mus musculus)
- Gasdermin a3 n-terminal domain (810 kDa, Complex from Mus musculus)
Cryo-EM structure of the Gasdermin A3 membrane pore
Ruan J, Xia S, Liu X, Lieberman J, Wu H
Nature (2018) 557 pp. 62-67 [ Pubmed: 29695864 DOI: doi:10.1038/s41586-018-0058-6 ]
- Gasdermin a3 (Protein from Mus musculus)
- Gasdermin a3 n domain (1 MDa, Complex from Mus musculus)
Cryo-EM structure of the Gasdermin A3 membrane pore
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6cb8
Q-score: 0.254
Ruan J, Xia S, Liu X, Lieberman J, Wu H
Nature (2018) 557 pp. 62-67 [ Pubmed: 29695864 DOI: doi:10.1038/s41586-018-0058-6 ]
- Gasdermin-a3 (30 kDa, Protein from Mus musculus)
- Cardiolipin (1 kDa, Ligand)
- Gasdermin a3 n domain (810 kDa, Complex from Mus musculus)