Cryo-EM structure of human SIDT1 protein with C1 symmetry at neutral pH
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8woq
Q-score: 0.501
Liu W, Tang M, Wang J, Wang F, Song G, Zhang X, Wu S, Ru H
Cell Discov (2024) 10 pp. 21-21 [ Pubmed: 38378654 DOI: doi:10.1038/s41421-024-00647-2 ]
- Sid1 transmembrane family member 1 (99 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Octanoic acid (2-hydroxy-1-hydroxymethyl-heptadec-3-enyl)-amide (425 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Ternary complex of sidt1 in complex with unknown lipids (Complex from Homo sapiens)
- Oleic acid (282 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human SIDT1 protein with C2 symmetry at neutral pH
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8wor
Q-score: 0.533
Liu W, Tang M, Wang J, Wang F, Song G, Zhang X, Wu S, Ru H
Cell Discov (2024) 10 pp. 21-21 [ Pubmed: 38378654 DOI: doi:10.1038/s41421-024-00647-2 ]
- Sid1 transmembrane family member 1 (99 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Octanoic acid (2-hydroxy-1-hydroxymethyl-heptadec-3-enyl)-amide (425 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Ternary complex of sidt1 in complex with unknown lipids (Complex from Homo sapiens)
- Oleic acid (282 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human SIDT1 protein with C1 symmetry at low pH
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8wos
Q-score: 0.418
Liu W, Tang M, Wang J, Wang F, Song G, Zhang X, Wu S, Ru H
Cell Discov (2024) 10 pp. 21-21 [ Pubmed: 38378654 DOI: doi:10.1038/s41421-024-00647-2 ]
- Sid1 transmembrane family member 1 (99 kDa, Protein from Homo sapiens)
- Human sidt1 at low ph (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human SIDT1 protein with C2 symmetry at low pH
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 8wot
Q-score: 0.458
Liu W, Tang M, Wang J, Wang F, Song G, Zhang X, Wu S, Ru H
Cell Discov (2024) 10 pp. 21-21 [ Pubmed: 38378654 DOI: doi:10.1038/s41421-024-00647-2 ]
- Sid1 transmembrane family member 1 (99 kDa, Protein from Homo sapiens)
- Human sidt1 at low ph (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of the post state human RNA Polymerase I Elongation Complex
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 7vbb
Q-score: 0.401
Zhao D, Liu W, Chen K, Wu Z, Yang H, Xu Y
Cell Discov (2021) 7 pp. 97-97 [ DOI: doi:10.1038/s41421-021-00335-5 Pubmed: 34671025 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa49 (47 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa43 (37 kDa, Protein from Homo sapiens)
- Rna (5'-r(p*up*gp*cp*up*gp*ap*cp*u)-3') (2 kDa, RNA from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa1 (194 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa34 (55 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Post state of human rna polymerase i elongation complex (Complex from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa2 (128 kDa, Protein from Homo sapiens)
- Dna (5'-d(*cp*tp*gp*tp*cp*cp*tp*cp*tp*gp*gp*cp*gp*a)-3') (4 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
Structure of the pre state human RNA Polymerase I Elongation Complex
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7vba
Q-score: 0.525
Zhao D, Liu W, Chen K, Wu Z, Yang H, Xu Y
Cell Discov (2021) 7 pp. 97-97 [ DOI: doi:10.1038/s41421-021-00335-5 Pubmed: 34671025 ]
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Rna (5'-r(p*up*gp*cp*up*gp*ap*cp*u)-3') (2 kDa, RNA from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa43 (37 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa2 (128 kDa, Protein from Homo sapiens)
- 5'-o-[(s)-hydroxy{[(s)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine (481 Da, Ligand)
- Dna-directed rna polymerase i subunit rpa34 (55 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*gp*cp*cp*ap*gp*ap*gp*ap*cp*ap*gp*cp*gp*ap*gp*tp*cp*ap*gp*cp*ap*a)-3') (6 kDa, DNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*a*cp*tp*gp*tp*cp*cp*tp*cp*tp*gp*gp*c)-3') (3 kDa, DNA from Homo sapiens)
- Human rna polymerase i elongation complex (Complex from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa49 (47 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa1 (194 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
Back track state of human RNA Polymerase I Elongation Complex
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7vbc
Q-score: 0.373
Zhao D, Liu W, Chen K, Wu Z, Yang H, Xu Y
Cell Discov (2021) 7 pp. 97-97 [ DOI: doi:10.1038/s41421-021-00335-5 Pubmed: 34671025 ]
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa49 (47 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa43 (37 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa1 (194 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa34 (55 kDa, Protein from Homo sapiens)
- Rna (5'-r(p*up*gp*cp*up*gp*a)-3') (1 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*ap*gp*gp*ap*cp*ap*gp*cp*gp*tp*gp*tp*cp*ap*gp*cp*ap*ap*tp*a)-3') (6 kDa, DNA from Homo sapiens)
- Back track state of human rna polymerase i elongation complex (Complex from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac2 (15 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa2 (128 kDa, Protein from Homo sapiens)
- Dna (5'-d(*gp*tp*ap*cp*tp*gp*tp*cp*cp*tp*cp*tp*gp*g)-3') (4 kDa, DNA from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i and iii subunit rpac1 (39 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase i subunit rpa12 (13 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Homo sapiens)