Human cytomegalovirus portal vertex, virion configuration 1 (VC1)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8tep
Q-score: 0.374
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Inner tegument protein (110 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, virion configuration 2 (VC2)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8tes
Q-score: 0.567
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, non-infectious enveloped particle (NIEP) configuration 1 (NC1)
Resolution: 4.26 Å
EM Method: Single-particle
Fitted PDBs: 8tet
Q-score: 0.461
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 8teu
Q-score: 0.43
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus penton vertex, CVSC-bound configuration
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8tew
Q-score: 0.544
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxg
Q-score: 0.485
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C8 scfv light chain (12 kDa, Protein from Homo sapiens)
- Zika virus (Virus from Zika virus)
- C8 scfv heavy chain (13 kDa, Protein from Homo sapiens)
- Membrane m protein (379 kDa, Protein from Zika virus)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8cxh
Q-score: 0.535
Liu W, Zhang XK, Gong DY, Dai XH, Sharma A, Zhang TH, Rey F, Zhou ZH
To Be Published
- C10 light chain (11 kDa, Protein from Homo sapiens)
- Membrane m protein (379 kDa, Protein from Zika virus)
- Zika virus (Virus from Zika virus)
- C10 heavy chain (14 kDa, Protein from Homo sapiens)
- Ankyrin repeat family a protein 2,envelope e protein (69 kDa, Protein from Zika virus)
Structure of human transfer RNA visualized in the cytomegalovirus, a DNA virus
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7liv
Q-score: 0.231
Liu YT, Strugatsky D, Liu W, Zhou ZH
Nat Commun (2021) 12 pp. 5513-5513 [ DOI: doi:10.1038/s41467-021-25791-1 Pubmed: 34535641 ]
- Major capsid protein (154 kDa, Protein from Human cytomegalovirus (strain AD169))
- Small capsomere-interacting protein (8 kDa, Protein from Human cytomegalovirus (strain AD169))
- Tegument protein pp150 (33 kDa, Protein from Human cytomegalovirus (strain AD169))
- Triplex capsid protein 1 (33 kDa, Protein from Human cytomegalovirus (strain AD169))
- Triplex capsid protein 2 (34 kDa, Protein from Human cytomegalovirus (strain AD169))
- Human cytomegalovirus (strain ad169) (Virus from Human cytomegalovirus (strain AD169))
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6w19
Q-score: 0.059
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6w2d
Q-score: 0.28
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ Pubmed: 32719506 DOI: doi:10.1038/s41564-020-0758-1 ]
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))