Cryo-EM structure of partial VP4 from simian rotavirus SA11
Resolution: 3.84 Å
EM Method: Single-particle
Fitted PDBs: 8ygr
Q-score: 0.413
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Rotavirus a (Virus from Rotavirus A)
- Partial vp4 of rotavirus (Complex from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8ygs
Q-score: 0.444
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Immune complex of rotavirus with 7h13 (Complex from Rotavirus A)
- Antibody 7h13 light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Antibody 7h13 heavy chain (12 kDa, Protein from Mus musculus)
- Fab 7h13 (Complex from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Rotavirus vp4 (Complex from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13 at Low concentration
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (left side)
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8ygt
Q-score: 0.559
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Immune complex of rotavirus with 7h13 (Complex from Rotavirus A)
- Antibody 7h13-i54g mutant heavy chain (12 kDa, Protein from Mus musculus)
- Fab 7h13 (Complex from Mus musculus)
- Antibody 7h13-i54g mutant light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Rotavirus vp4 (Complex from Rotavirus A)
Cryo-EM structure of simian rotavirus SA11 VP4 in complex with nAb 7H13-I54G mutant (right side)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8ygu
Q-score: 0.526
Huang Y, Song F, Zeng Y, Sun H, Sheng R, Wang X, Liu L, Luo G, Jiang Y, Chen Y, Zhang M, Zhang S, Gu Y, Yu H, Li S, Li T, Zheng Q, Ge S, Zhang J, Xia N
Nat Commun (2025) 16 pp. 838-838 [ Pubmed: 39833145 DOI: doi:10.1038/s41467-025-56114-3 ]
- Outer capsid protein vp4 (87 kDa, Protein from Rotavirus A)
- Immune complex of rotavirus with 7h13-i54g mutant (Complex from Rotavirus A)
- Fab 7h13 (Complex from Rotavirus A)
- Antibody 7h13-i54g mutant heavy chain (12 kDa, Protein from Mus musculus)
- Antibody 7h13-i54g mutant light chain (11 kDa, Protein from Mus musculus)
- Outer capsid protein vp4 (64 kDa, Protein from Rotavirus A)
- Rotavirus vp4 (Complex from Rotavirus A)
Resolution: 2.12 Å
EM Method: Single-particle
Fitted PDBs: 7xy9
Q-score: 0.714
Chen Q, Qu G, Li X, Feng M, Yang F, Li Y, Li J, Tong F, Song S, Wang Y, Sun Z, Luo G
Nat Commun (2023) 14 pp. 2117-2117 [ Pubmed: 37055470 DOI: doi:10.1038/s41467-023-37921-y ]
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Enzyme assembled gel (Complex from Thermoanaerobacter brockii)
- Water (18 Da, Ligand)
- Nadp-dependent isopropanol dehydrogenase (38 kDa, Protein from Thermoanaerobacter brockii)
Cryo-EM Structure of the Exocyst Complex
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 5yfp
Q-score: 0.155
Mei K, Li Y, Wang S, Shao G, Wang J, Ding Y, Luo G, Yue P, Liu JJ, Wang X, Dong MQ, Wang HW, Guo W
Nat Struct Mol Biol (2018) 25 pp. 139-146 [ Pubmed: 29335562 DOI: doi:10.1038/s41594-017-0016-2 ]
- Exocyst complex component exo70 (71 kDa, Protein from Saccharomyces cerevisia S288c)
- Exocyst complex component sec10 (100 kDa, Protein from Saccharomyces cerevisia S288c)
- Exocyst complex component sec6 (93 kDa, Protein from Saccharomyces cerevisia S288c)
- Cryo-em map of the yeast exocyst complex overall structure at 5.5a resolution (844 kDa, Complex from Saccharomyces cerevisia S288c)
- Exocyst complex component sec3 (154 kDa, Protein from Saccharomyces cerevisiae S288c)
- Exocyst complex component sec15 (105 kDa, Protein from Saccharomyces cerevisia S288c)
- Exocyst complex component exo84 (85 kDa, Protein from Saccharomyces cerevisiae S288c)
- Exocyst complex component sec5 (112 kDa, Protein from Saccharomyces cerevisia S288c)
- Exocyst complex component sec8 (122 kDa, Protein from Saccharomyces cerevisia S288c)