Cryo-EM structure of HACE1 monomer
Resolution: 3.92 Å
EM Method: Single-particle
Fitted PDBs: 8h8x
Q-score: 0.36
Singh S, Machida S, Tulsian NK, Choong YK, Ng J, Shankar S, Liu Y, Chandiramani KV, Shi J, Sivaraman J
Adv Sci (2023) 10 pp. e2207672-e2207672 [ DOI: doi:10.1002/advs.202207672 Pubmed: 37537642 ]
- Hace1 (100 kDa, Complex from Homo sapiens)
- E3 ubiquitin-protein ligase hace1 (102 kDa, Protein from Homo sapiens)
Cryo-EM structure of HACE1 dimer
Resolution: 4.55 Å
EM Method: Single-particle
Fitted PDBs: 8hae
Q-score: 0.284
Singh S, Machida S, Tulsian NK, Choong YK, Ng J, Shankar S, Liu Y, Chandiramani KV, Shi J, Sivaraman J
Adv Sci (2023) 10 pp. e2207672-e2207672 [ DOI: doi:10.1002/advs.202207672 Pubmed: 37537642 ]
- Hace1 dimer (200 kDa, Complex from Homo sapiens)
- E3 ubiquitin-protein ligase hace1 (102 kDa, Protein from Homo sapiens)
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8i54
Q-score: 0.265
Jianwei L, Jobichen C, Machida S, Meng S, Read RJ, Hongying C, Jian S, Yuan YA, Sivaraman J
PLoS Biol (2023) 21 pp. e3002023-e3002023 [ DOI: doi:10.1371/journal.pbio.3002023 Pubmed: 36917574 ]
- Lb2cas12a (141 kDa, Protein from Lachnospiraceae bacterium MA2020)
- Dna (5'-d(*ap*gp*tp*gp*cp*tp*tp*tp*a)-3') (2 kDa, DNA from synthetic construct)
- Dna (25-mer) (7 kDa, DNA from synthetic construct)
- Lbcas12a-crrna-dna ternary complex (140 kDa, Complex from Lachnospiraceae bacterium MA2020)
- Rna (33-mer) (10 kDa, RNA from Lachnospiraceae bacterium MA2020)
Nucleosome with ALB1 enhancer DNA sequence
Takizawa Y, Tanaka H, Machida S, Koyama M, Maehara K, Ohkawa Y, Wade PA, Wolf M, Kurumizaka H
Open Biol (2018) 8 [ DOI: doi:10.1098/rsob.170255 Pubmed: 29563192 ]
- Nucleosome with alb1-dna sequence (200 kDa, Complex from Homo sapiens)
Nucleosome with ALB1 enhancer DNA sequence, no symmetry applied
Takizawa Y, Tanaka H, Machida S, Koyama M, Maehara K, Ohkawa Y, Wade PA, Wolf M, Kurumizaka H
Open Biol (2018) 8 [ DOI: doi:10.1098/rsob.170255 Pubmed: 29563192 ]
Human HP1alpha-dinucleosome H3K9Me3 class A
Machida S, Takizawa Y, Ishimaru M, Sugita Y, Sekine S, Nakayama JI, Wolf M, Kurumizaka H
Mol Cell (2018) [ Pubmed: 29336876 DOI: doi:10.1016/j.molcel.2017.12.011 ]
- Human hp1alpha-dinucleosome h3k9me3 complex (500 kDa, Complex from Homo sapiens)
Human HP1alpha-dinucleosome H3K9Me3 class B
Machida S, Takizawa Y, Ishimaru M, Sugita Y, Sekine S, Nakayama JI, Wolf M, Kurumizaka H
Mol Cell (2018) [ Pubmed: 29336876 DOI: doi:10.1016/j.molcel.2017.12.011 ]
- Human hp1alpha-dinucleosome h3k9me3 complex (500 kDa, Complex from Homo sapiens)
Human HP1alpha-dinucleosome H3K9Me3 class C
Machida S, Takizawa Y, Ishimaru M, Sugita Y, Sekine S, Nakayama JI, Wolf M, Kurumizaka H
Mol Cell (2018) [ Pubmed: 29336876 DOI: doi:10.1016/j.molcel.2017.12.011 ]
- Human hp1alpha-dinucleosome h3k9me3 complex (500 kDa, Complex from Homo sapiens)
Mononucleosome from HP1alpha-dinucleosome-H3K9me3
Machida S, Takizawa Y, Ishimaru M, Sugita Y, Sekine S, Nakayama JI, Wolf M, Kurumizaka H
Mol Cell (2018) [ Pubmed: 29336876 DOI: doi:10.1016/j.molcel.2017.12.011 ]
- Mononucleosome from hp1alpha-dinucleosome-h3k9me3 (500 kDa, Complex from Homo sapiens)
Human HP1beta-dinucleosome H3K9Me3
Machida S, Takizawa Y, Ishimaru M, Sugita Y, Sekine S, Nakayama JI, Wolf M, Kurumizaka H
Mol Cell (2018) [ Pubmed: 29336876 DOI: doi:10.1016/j.molcel.2017.12.011 ]
- Human hp1beta-dinucleosome h3k9me3 complex (500 kDa, Complex from Homo sapiens)