Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8xwp
Q-score: 0.454
Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T
Commun Biol (2024) 7 pp. 1303-1303 [ Pubmed: 39414992 DOI: doi:10.1038/s42003-024-06905-z ]
- Et-1 bound etbr-gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Endothelin receptor type b (38 kDa, Protein from Homo sapiens)
- Scfv16 (29 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Endothelin-1 (2 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8xwq
Q-score: 0.29
Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T
Commun Biol (2024) 7 pp. 1303-1303 [ Pubmed: 39414992 DOI: doi:10.1038/s42003-024-06905-z ]
- Et-1 bound etbr-gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Endothelin receptor type b (38 kDa, Protein from Homo sapiens)
- Scfv16 (29 kDa, Protein from Mus musculus)
- Endothelin-1 (2 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
Cryo-EM structure focused on the receptor of the ET-1 bound ETBR-DNGI complex
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8zrt
Q-score: 0.443
Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T
Commun Biol (2024) 7 pp. 1303-1303 [ Pubmed: 39414992 DOI: doi:10.1038/s42003-024-06905-z ]
- Endothelin-1 (2 kDa, Protein from Homo sapiens)
- Endothelin receptor type b (38 kDa, Protein from Homo sapiens)
- Et-1 bound etbr complex (Complex from Homo sapiens)
Mouse apoferritin, Dataset B taken with CRYO ARM 300
Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
Communications chemistry (2023) 6 [ DOI: 10.1038/s42004-023-00900-x Pubmed: 37258702 ]
Image sets:
Mouse apoferritin, Dataset A taken with CRYO ARM 300
Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
Communications chemistry (2023) 6 [ DOI: 10.1038/s42004-023-00900-x Pubmed: 37258702 ]
Image sets:
Single-particle cryo-EM structure of mouse apoferritin at 1.49 Angstrom resolution (Dataset B)
Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
Commun Chem (2023) 6 pp. 98-98 [ Pubmed: 37258702 DOI: doi:10.1038/s42004-023-00900-x ]
- Ferritin heavy chain (Protein from Mus musculus)
- Apoferritin (Complex from Mus musculus)
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Resolution: 1.19 Å
EM Method: Single-particle
Fitted PDBs: 8j5a
Q-score: 0.944
Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
Commun Chem (2023) 6 pp. 98-98 [ Pubmed: 37258702 DOI: doi:10.1038/s42004-023-00900-x ]
- Ferritin heavy chain (20 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Apoferritin from mus musculus (Complex from Mus musculus)
Cryo-EM Structure of Apple Latent Spherical Virus (ALSV)
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 7chk
Q-score: 0.598
Naitow H, Hamaguchi T, Maki-Yonekura S, Isogai M, Yoshikawa N, Yonekura K
Commun Biol (2020) 3 pp. 488-488 [ DOI: doi:10.1038/s42003-020-01217-4 Pubmed: 32887929 ]
- Vp20 protein (19 kDa, Protein from Apple latent spherical virus)
- Vp25 protein (24 kDa, Protein from Apple latent spherical virus)
- Apple latent spherical virus (Virus from Apple latent spherical virus)
- Vp24 protein (21 kDa, Protein from Apple latent spherical virus)
Electron energy-filtered diffraction (eEFD) of catalase 3D crystal with CRYO ARM 300
Yonekura K, Ishikawa T, Maki-Yonekura S
J. Struct. Biol. (2019) 206 pp. 243-253 [ Pubmed: 30928615 DOI: 10.1016/j.jsb.2019.03.009 ]
Image sets:
Cryo-EM structure of human apoferritin at 1.9A resolution by CRYO ARM 300
Hamaguchi T, Maki-Yonekura S, Naitow H, Matsuura Y, Ishikawa T, Yonekura K
J Struct Biol (2019) 207 pp. 40-48 [ Pubmed: 30991102 DOI: doi:10.1016/j.jsb.2019.04.011 ]
- Apoferritin (Cell from Homo sapiens)