Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8xwp
Q-score: 0.454
Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T
Commun Biol (2024) 7 pp. 1303-1303 [ Pubmed: 39414992 DOI: doi:10.1038/s42003-024-06905-z ]
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Scfv16 (29 kDa, Protein from Mus musculus)
- Et-1 bound etbr-gi complex (Complex from Homo sapiens)
- Endothelin receptor type b (38 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Endothelin-1 (2 kDa, Protein from Homo sapiens)
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8xwq
Q-score: 0.29
Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T
Commun Biol (2024) 7 pp. 1303-1303 [ Pubmed: 39414992 DOI: doi:10.1038/s42003-024-06905-z ]
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Scfv16 (29 kDa, Protein from Mus musculus)
- Et-1 bound etbr-gi complex (Complex from Homo sapiens)
- Endothelin receptor type b (38 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Endothelin-1 (2 kDa, Protein from Homo sapiens)
Cryo-EM structure focused on the receptor of the ET-1 bound ETBR-DNGI complex
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8zrt
Q-score: 0.443
Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T
Commun Biol (2024) 7 pp. 1303-1303 [ Pubmed: 39414992 DOI: doi:10.1038/s42003-024-06905-z ]
- Endothelin-1 (2 kDa, Protein from Homo sapiens)
- Et-1 bound etbr complex (Complex from Homo sapiens)
- Endothelin receptor type b (38 kDa, Protein from Homo sapiens)
Single-particle cryo-EM structure of mouse apoferritin at 1.49 Angstrom resolution (Dataset B)
Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
Commun Chem (2023) 6 pp. 98-98 [ Pubmed: 37258702 DOI: doi:10.1038/s42004-023-00900-x ]
- Apoferritin (Complex from Mus musculus)
- Ferritin heavy chain (Protein from Mus musculus)
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Resolution: 1.19 Å
EM Method: Single-particle
Fitted PDBs: 8j5a
Q-score: 0.944
Maki-Yonekura S, Kawakami K, Takaba K, Hamaguchi T, Yonekura K
Commun Chem (2023) 6 pp. 98-98 [ Pubmed: 37258702 DOI: doi:10.1038/s42004-023-00900-x ]
- Ferritin heavy chain (20 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- Apoferritin from mus musculus (Complex from Mus musculus)
- Sodium ion (22 Da, Ligand)
Cryo-EM Structure of Apple Latent Spherical Virus (ALSV)
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 7chk
Q-score: 0.598
Naitow H, Hamaguchi T, Maki-Yonekura S, Isogai M, Yoshikawa N, Yonekura K
Commun Biol (2020) 3 pp. 488-488 [ DOI: doi:10.1038/s42003-020-01217-4 Pubmed: 32887929 ]
- Vp24 protein (21 kDa, Protein from Apple latent spherical virus)
- Apple latent spherical virus (Virus from Apple latent spherical virus)
- Vp25 protein (24 kDa, Protein from Apple latent spherical virus)
- Vp20 protein (19 kDa, Protein from Apple latent spherical virus)
Cryo-EM structure of human apoferritin at 1.9A resolution by CRYO ARM 300
Hamaguchi T, Maki-Yonekura S, Naitow H, Matsuura Y, Ishikawa T, Yonekura K
J Struct Biol (2019) 207 pp. 40-48 [ Pubmed: 30991102 DOI: doi:10.1016/j.jsb.2019.04.011 ]
- Apoferritin (Cell from Homo sapiens)
Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM)
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 5zfu
Q-score: 0.151
Maki-Yonekura S, Matsuoka R, Yamashita Y, Shimizu H, Tanaka M, Iwabuki F, Yonekura K
eLife (2018) 7 [ DOI: doi:10.7554/eLife.35419 Pubmed: 29661272 ]
Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM)
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 5zfv
Q-score: 0.158
Maki-Yonekura S, Matsuoka R, Yamashita Y, Shimizu H, Tanaka M, Iwabuki F, Yonekura K
eLife (2018) 7 [ DOI: doi:10.7554/eLife.35419 Pubmed: 29661272 ]
Electron microscopy of the negatively-stained Cmr complex from Thermus thermophilus HB8.
Staals RH, Agari Y, Maki-Yonekura S, Zhu Y, Taylor DW, van Duijn E, Barendregt A, Vlot M, Koehorst JJ, Sakamoto K, Masuda A, Dohmae N, Schaap PJ, Doudna JA, Heck AJ, Yonekura K, van der Oost J, Shinkai A
Mol Cell (2013) 52 pp. 135-145 [ DOI: doi:10.1016/j.molcel.2013.09.013 Pubmed: 24119403 ]
- Cmr1 (40 kDa, Protein from Thermus thermophilus)
- Cmr2 (65 kDa, Protein from Thermus thermophilus)
- Cmr4 (30 kDa, Protein from Thermus thermophilus)
- Cmr3 (40 kDa, Protein from Thermus thermophilus)
- Cmr5 (10 kDa, Protein from Thermus thermophilus)
- Cmr6 (40 kDa, Protein from Thermus thermophilus)
- Cmr complex from thermus thermophilus (400 kDa, Sample)
- Crrna (20 kDa, RNA from Thermus thermophilus)