Electron Microscopy Data Bank

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STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF THIORHODOVIBRIO STRAIN 970

Release date: Oct. 7, 2020
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 7c9r
Q-score: 0.632

Tani K, Kanno R, Makino Y, Hall M, Takenouchi M, Imanishi M, Yu LJ, Overmann J, Madigan MT, Kimura Y, Mizoguchi A, Humbel BM, Wang-Otomo ZY

Nat Commun (2020) 11 pp. 4955-4955 [ DOI: doi:10.1038/s41467-020-18748-3 Pubmed: 33009385 ]

Sample:

Reaction center protein m chain (36 kDa, Protein from Thiorhodovibrio sp. 970)
Light-harvesting-reaction center complex from the purple phototrophic bacterium thiorhodovibrio strain 970 (400 kDa, Complex from Thiorhodovibrio sp. 970)
Photosynthetic reaction center, subunit h, bacterial (28 kDa, Protein from Thiorhodovibrio sp. 970)
Antenna complex alpha/beta subunit (5 kDa, Protein from Thiorhodovibrio sp. 970)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Alpha subunit 2 of light-harvesting 1 complex (9 kDa, Protein from Thiorhodovibrio sp. 970)
Magnesium ion (24 Da, Ligand)
Octadecane (254 Da, Ligand)
(6~{e},8~{e},10~{e},12~{e},14~{e},16~{e},18~{e},20~{e},22~{e},24~{e},26~{e})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26-undecaene (600 Da, Ligand)
Photosynthetic reaction center cytochrome c subunit (42 kDa, Protein from Thiorhodovibrio sp. 970)
Lhc domain-containing protein (8 kDa, Protein from Thiorhodovibrio sp. 970)
Calcium ion (40 Da, Ligand)
Antenna complex alpha/beta subunit (5 kDa, Protein from Thiorhodovibrio sp. 970)
L subunit of the reaction center (30 kDa, Protein from Thiorhodovibrio sp. 970)
Bacteriochlorophyll a (911 Da, Ligand)
Cardiolipin (1 kDa, Ligand)
Menaquinone 8 (717 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Bacteriopheophytin a (889 Da, Ligand)
Ubiquinone-8 (727 Da, Ligand)
(1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
Fe (iii) ion (55 Da, Ligand)
Diacyl glycerol (625 Da, Ligand)
Alpha subunit 1 of light-harvesting 1 complex (8 kDa, Protein from Thiorhodovibrio sp. 970)
Antenna complex alpha/beta subunit (9 kDa, Protein from Thiorhodovibrio sp. 970)

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