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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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primary_citation_author:"Malone LA" AND xref_links:"pdb"

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EMD-14224

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2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from Synechocystis sp. PCC 6803 with natively bound lipids and plastoquinone molecules

Release date: July 6, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7r0w
Q-score: 0.523

Proctor MS, Malone LA, Farmer DA, Swainsbury DJK, Hawkings FR, Pastorelli F, Emrich-Mills TZ, Siebert CA, Hunter CN, Johnson MP, Hitchcock A

Biochem J (2022) 479 pp. 1487-1503 [ Pubmed: 35726684 DOI: doi:10.1042/BCJ20220124 ]

Sample:

Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Synechocystis sp. PCC 6803)
Beta,beta-caroten-4-one (550 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Cytochrome f (35 kDa, Protein from Synechocystis sp. PCC 6803)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome b6 (25 kDa, Protein from Synechocystis sp. PCC 6803)
Uncharacterized protein cp097, conserved in cyanobacteria (7 kDa, Protein from Synechocystis)
Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Synechocystis sp. PCC 6803)
(4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Cytochrome b6-f complex subunit 7 (3 kDa, Protein from Synechocystis sp. PCC 6803)
Cytochrome b6 (3 kDa, Protein from Synechocystis sp. PCC 6803)
Protoporphyrin ix containing fe (616 Da, Ligand)
(1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
(1s,8e)-1-{[(2s)-1-hydroxy-3-{[(1s)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol (570 Da, Ligand)
Heme c (618 Da, Ligand)
Cytochrome b6f complex in association with petp (Complex from Synechocystis sp. PCC 6803)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Water (18 Da, Ligand)
Eicosane (282 Da, Ligand)
Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Synechocystis sp. PCC 6803)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Rieske domain, petc (20 kDa, Protein from Synechocystis sp. PCC 6803)

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EMD-15017

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3.15 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Synechocystis sp. PCC 6803 with natively bound plastoquinone and lipid molecules.

Release date: July 6, 2022
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7zxy
Q-score: 0.54

Proctor MS, Malone LA, Farmer DA, Swainsbury DJK, Hawkings FR, Pastorelli F, Emrich-Mills TZ, Siebert CA, Hunter CN, Johnson MP, Hitchcock A

Biochem J (2022) 479 pp. 1487-1503 [ Pubmed: 35726684 DOI: doi:10.1042/BCJ20220124 ]

Sample:

Cytochrome f (30 kDa, Protein from Synechocystis sp. PCC 6803)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Synechocystis sp. PCC 6803)
Chlorophyll a (893 Da, Ligand)
Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Synechocystis sp. PCC 6803)
Eicosane (282 Da, Ligand)
Cytochrome b6-f complex iron-sulfur subunit 2 (19 kDa, Protein from Synechocystis sp. PCC 6803)
Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Synechocystis sp. PCC 6803)
Cytochrome b6 (25 kDa, Protein from Synechocystis sp. PCC 6803)
Cytochrome b6 (3 kDa, Protein from Synechocystis sp. PCC 6803)
Beta,beta-caroten-4-one (550 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
(1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
Cytochrome b6f with natively associated lipids and plastoquinone (Complex from Synechocystis sp. PCC 6803)
Heme c (618 Da, Ligand)
Cytochrome b6-f complex subunit 7 (3 kDa, Protein from Synechocystis sp. PCC 6803)

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EMD-11080

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RC-LH1(16) complex from Rhodopseudomonas palustris

Release date: Jan. 13, 2021
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6z5r
Q-score: 0.603

Swainsbury DJK, Qian P, Jackson PJ, Faries KM, Niedzwiedzki DM, Martin EC, Farmer DA, Malone LA, Thompson RF, Ranson NA, Canniffe DP, Dickman MJ, Holten D, Kirmaier C, Hitchcock A, Hunter CN

Sci Adv (2021) 7 [ Pubmed: 33523887 DOI: doi:10.1126/sciadv.abe2631 ]

Sample:

Reaction center-light harvesting complex 1 (3 MDa, Complex from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Ubiquinone-10 (863 Da, Ligand)
(6~{r},10~{s},14~{r},19~{r},23~{s},24~{e},27~{s},28~{e})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol (575 Da, Ligand)
Cardiolipin (1 kDa, Ligand)
Water (18 Da, Ligand)
Reaction center protein m chain (34 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
(4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Bacteriochlorophyll a (911 Da, Ligand)
Light-harvesting complex 1 alpha chain (5 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Reaction center protein l chain (30 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Bacteriopheophytin a (889 Da, Ligand)
Fe (iii) ion (55 Da, Ligand)
Light-harvesting complex 1 beta chain (5 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Dodecyl-beta-d-maltoside (510 Da, Ligand)
(1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
H subunit of photosynthetic reaction center complex (27 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Spirilloxanthin (596 Da, Ligand)

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EMD-11081

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RC-LH1(14)-W complex from Rhodopseudomonas palustris

Release date: Jan. 13, 2021
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 6z5s
Q-score: 0.593

Swainsbury DJK, Qian P, Jackson PJ, Faries KM, Niedzwiedzki DM, Martin EC, Farmer DA, Malone LA, Thompson RF, Ranson NA, Canniffe DP, Dickman MJ, Holten D, Kirmaier C, Hitchcock A, Hunter CN

Sci Adv (2021) 7 [ Pubmed: 33523887 DOI: doi:10.1126/sciadv.abe2631 ]

Sample:

Ubiquinone-10 (863 Da, Ligand)
Light-harvesting complex 1 beta chain (7 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
(6~{r},10~{s},14~{r},19~{r},23~{s},24~{e},27~{s},28~{e})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol (575 Da, Ligand)
Cardiolipin (1 kDa, Ligand)
Spirilloxanthin (596 Da, Ligand)
Reaction center protein m chain (34 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Water (18 Da, Ligand)
Bacteriochlorophyll a (911 Da, Ligand)
Reaction center protein l chain (30 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Light harvesting complex 1 protein w (10 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
Bacteriopheophytin a (889 Da, Ligand)
Fe (iii) ion (55 Da, Ligand)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
(1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
Reaction center-light harvesting complex 1-protein w (3 MDa, Complex from Rhodopseudomonas palustris CGA009)
H subunit of photosynthetic reaction center complex (27 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
(4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Light-harvesting complex 1 alpha chain (7 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))

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EMD-4981

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3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules

Release date: Nov. 13, 2019
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 6rqf
Q-score: 0.511

Malone LA, Qian P, Mayneord GE, Hitchcock A, Farmer DA, Thompson RF, Swainsbury DJK, Ranson NA, Hunter CN, Johnson MP

Nature (2019) 575 pp. 535-539 [ DOI: doi:10.1038/s41586-019-1746-6 Pubmed: 31723268 ]

Sample:

Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinach)
Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinach)
Beta-carotene (536 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Spinach cytochrome b6f complex with native bound plastoquinone and thylakoid lipids (Complex from Spinacia oleracea)
(4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinach)
Cytochrome b6-f complex subunit 7 (3 kDa, Protein from Spinach)
Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinach)
Heme c (618 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Cytochrome b6 (24 kDa, Protein from Spinach)
(1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (18 kDa, Protein from Spinach)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Cytochrome f (31 kDa, Protein from Spinach)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)

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Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

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Select database:

EMDB [5]

Format:

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