FAdV-C4 AG234 Aviadenovirus structure, strain AG234
Perez-Illana MP, Schachnner A, Condezo GN, Hernando-Perez M, Martinez M, Marabini R, Hess M, San Martin C
To Be Published
FAdV-C4 AG234 Aviadenovirus structure, strain KR5
Perez-Illana MP, Schachnner A, Condezo GN, Hernando-Perez M, Martinez M, Marabini R, Hess M, San Martin C
To Be Published
- Pre-hexon-linking protein viii (26 kDa, Protein from Fowl aviadenovirus C)
- Fowl aviadenovirus c (Virus from Fowl aviadenovirus C)
- Hexon protein (106 kDa, Protein from Fowl aviadenovirus C)
- Piiia (65 kDa, Protein from Fowl aviadenovirus C)
- Penton protein (57 kDa, Protein from Fowl aviadenovirus C)
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ Pubmed: 35816514 DOI: doi:10.1371/journal.ppat.1010631 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ Pubmed: 35816514 DOI: doi:10.1371/journal.ppat.1010631 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ Pubmed: 35816514 DOI: doi:10.1371/journal.ppat.1010631 ]
SARS-CoV-2 S protein S:D614G mutant 1-up
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7qdh
Q-score: 0.079
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ Pubmed: 35816514 DOI: doi:10.1371/journal.ppat.1010631 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (138 kDa, Protein from Escherichia virus T4)
- Sars-cov-2 s protein s:d614g mutant (340 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
SARS-CoV-2 S protein S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ Pubmed: 35816514 DOI: doi:10.1371/journal.ppat.1010631 ]
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6yba
Q-score: 0.413
Perez-Illana M, Martinez M, Condezo GN, Hernando-Perez M, Mangroo C, Brown M, Marabini R, San Martin C
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abd9421 Pubmed: 33627423 ]
- Pre-hexon-linking protein iiia (64 kDa, Protein from Human adenovirus F serotype 41)
- Pre-histone-like nucleoprotein (20 kDa, Protein from Human adenovirus F serotype 41)
- Pre-protein vi (29 kDa, Protein from Human adenovirus F serotype 41)
- Hexon protein (104 kDa, Protein from Human adenovirus F serotype 41)
- Penton protein (57 kDa, Protein from Human adenovirus F serotype 41)
- Human adenovirus 41 (Virus from Human adenovirus 41)
- Pre-hexon-linking protein viii (25 kDa, Protein from Human adenovirus F serotype 41)
- Hexon-interlacing protein (13 kDa, Protein from Human adenovirus F serotype 41)
SARS-CoV-2 spike in prefusion state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6zow
Q-score: 0.451
Melero R, Sorzano COS, Foster B, Vilas JL, Martinez M, Marabini R, Ramirez-Aportela E, Sanchez-Garcia R, Herreros D, Del Cano L, Losana P, Fonseca-Reyna YC, Conesa P, Wrapp D, Chacon P, McLellan JS, Tagare HD, Carazo JM
IUCrJ (2020) 7 pp. 1059-1069 [ Pubmed: 33063791 DOI: doi:10.1107/S2052252520012725 ]
- Spike homotrimer in prefusion state (Complex from Severe acute respiratory syndrome coronavirus 2)
- Water (18 Da, Ligand)
- Dimethyl sulfoxide (78 Da, Ligand)
- Alpha-d-mannopyranose (180 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up closed conformation)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6zp5
Q-score: 0.417
Melero R, Sorzano COS, Foster B, Vilas JL, Martinez M, Marabini R, Ramirez-Aportela E, Sanchez-Garcia R, Herreros D, Del Cano L, Losana P, Fonseca-Reyna YC, Conesa P, Wrapp D, Chacon P, McLellan JS, Tagare HD, Carazo JM
IUCrJ (2020) 7 pp. 1059-1069 [ Pubmed: 33063791 DOI: doi:10.1107/S2052252520012725 ]
- Dimethyl sulfoxide (78 Da, Ligand)
- Sars-cov-2 spike in prefusion state (flexibility analysis, 1-up closed conformation) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Alpha-d-mannopyranose (180 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)