CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8u44
Q-score: 0.387
McIntire KM, Meng H, Lin TH, Kim W, Moore NE, Han J, McMahon M, Wang M, Malladi SK, Mohammed BM, Zhou JQ, Schmitz AJ, Hoehn KB, Carreno JM, Yellin T, Suessen T, Middleton WD, Teefey SA, Presti RM, Krammer F, Turner JS, Ward AB, Wilson IA, Kleinstein SH, Ellebedy AH
J Exp Med (2024) 221 [ Pubmed: 38935072 DOI: doi:10.1084/jem.20240668 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 05.gc.w2.3c10-h1_si06 heavy chain (25 kDa, Protein from Homo sapiens)
- Fab (Complex from Homo sapiens)
- Ha (Complex from Homo sapiens)
- Hemagglutinin ha1 chain (40 kDa, Protein from Influenza A virus)
- Hemagglutinin ha2 chain (26 kDa, Protein from Influenza A virus)
- 05.gc.w2.3c10-h1_si06 light chain (25 kDa, Protein from Homo sapiens)
- Immune complex of a/solomon islands/3/2006 h1 ha with fab 3c10 (Complex from Homo sapiens)
3H03 Fab in complex with influenza virus neuraminidase from A/Brevig Mission/1/1918 (H1N1)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8e6j
Q-score: 0.556
Hansen L, McMahon M, Turner HL, Zhu X, Turner JS, Ozorowski G, Stadlbauer D, Vahokoski J, Schmitz AJ, Rizk AA, Alsoussi WB, Strohmeier S, Yu W, Choreno-Parra JA, Jimenez-Alvarez L, Cruz-Lagunas A, Zuniga J, Mudd PA, Cox RJ, Wilson IA, Ward AB, Ellebedy AH, Krammer F
Immunity (2023) 56 pp. 1927-1938.e8 [ DOI: doi:10.1016/j.immuni.2023.07.004 Pubmed: 37506693 ]
- 3h03 fragment antigen binding light chain (23 kDa, Protein from Homo sapiens)
- 3h03 fab in complex with influenza virus neuraminidase from a/brevig mission/1/1918 (h1n1) (Complex from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- 3h03 fragment antigen binding heavy chain (24 kDa, Protein from Homo sapiens)
- Neuraminidase (49 kDa, Protein from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
2H08 Fab in complex with influenza virus neuraminidase from A/Brevig Mission/1/1918 (H1N1)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8e6k
Q-score: 0.512
Hansen L, McMahon M, Turner HL, Zhu X, Turner JS, Ozorowski G, Stadlbauer D, Vahokoski J, Schmitz AJ, Rizk AA, Alsoussi WB, Strohmeier S, Yu W, Choreno-Parra JA, Jimenez-Alvarez L, Cruz-Lagunas A, Zuniga J, Mudd PA, Cox RJ, Wilson IA, Ward AB, Ellebedy AH, Krammer F
Immunity (2023) 56 pp. 1927-1938.e8 [ DOI: doi:10.1016/j.immuni.2023.07.004 Pubmed: 37506693 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2h08 fab in complex with influenza virus neuraminidase from a/brevig mission/1/1918 (h1n1) (Complex from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- Neuraminidase (49 kDa, Protein from Influenza A virus (A/Brevig Mission/1/1918(H1N1)))
- 2h08 fragment antigen binding heavy chain (23 kDa, Protein from Homo sapiens)
- 2h08 fragment antigen binding light chain (23 kDa, Protein from Homo sapiens)
CryoEM map of anchor 222-1C06 Fab and lateral patch 2B05 Fab binding H1 HA
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 7t3d
Q-score: 0.464
Guthmiller JJ, Han J, Utset HA, Li L, Lan LY, Henry C, Stamper CT, McMahon M, O'Dell G, Fernandez-Quintero ML, Freyn AW, Amanat F, Stovicek O, Gentles L, Richey ST, de la Pena AT, Rosado V, Dugan HL, Zheng NY, Tepora ME, Bitar DJ, Changrob S, Strohmeier S, Huang M, Garcia-Sastre A, Liedl KR, Bloom JD, Nachbagauer R, Palese P, Krammer F, Coughlan L, Ward AB, Wilson PC
Nature (2022) 602 pp. 314-320 [ Pubmed: 34942633 DOI: doi:10.1038/s41586-021-04356-8 ]
- Hemagglutinin ha2 chain (19 kDa, Protein from Influenza A virus (A/California/04/2009(H1N1)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2b05 mab heavy chain (12 kDa, Protein from Homo sapiens)
- Monoclonal antibodies 222-1c06 and 2b05 (Complex from Homo sapiens)
- 2b05 mab light chain (11 kDa, Protein from Homo sapiens)
- Hemagglutinin (Complex from Influenza A virus (A/California/04/2009(H1N1)))
- 222-1c06 mab light chain (11 kDa, Protein from Homo sapiens)
- Cryoem map of anchor 222-1c06 fab and lateral patch 2b05 fab binding h1 ha (Complex from Homo sapiens)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus (A/California/04/2009(H1N1)))
- 222-1c06 mab heavy chain (13 kDa, Protein from Homo sapiens)
Structure of human 1G05 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6v4n
Q-score: 0.594
Madsen A, Dai YN, McMahon M, Schmitz AJ, Turner JS, Tan J, Lei T, Alsoussi WB, Strohmeier S, Amor M, Mohammed BM, Mudd PA, Simon V, Cox RJ, Fremont DH, Krammer F, Ellebedy AH
Immunity (2020) 53 pp. 852- [ Pubmed: 32976769 DOI: doi:10.1016/j.immuni.2020.08.015 ]
- Beta-d-mannopyranose (180 Da, Ligand)
- Human antibody (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- Antibody fab light chain (23 kDa, Protein from Homo sapiens)
- Influenza virus neuraminidase (Complex from Influenza B virus)
- Antibody fab heavy chain (26 kDa, Protein from Homo sapiens)
- Neuraminidase (50 kDa, Protein from Influenza B virus)
- Structure of human 1g05 fab in complex with influenza virus neuraminidase from b/phuket/3073/2013 (400 kDa, Complex)
Structure of human 2E01 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6v4o
Q-score: 0.525
Madsen A, Dai YN, McMahon M, Schmitz AJ, Turner JS, Tan J, Lei T, Alsoussi WB, Strohmeier S, Amor M, Mohammed BM, Mudd PA, Simon V, Cox RJ, Fremont DH, Krammer F, Ellebedy AH
Immunity (2020) 53 pp. 852- [ Pubmed: 32976769 DOI: doi:10.1016/j.immuni.2020.08.015 ]
- Beta-d-mannopyranose (180 Da, Ligand)
- Human antibody (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Antibody fab heavy chain (26 kDa, Protein from Homo sapiens)
- Structure of human 2e01 fab in complex with influenza virus neuraminidase from b/phuket/3073/2013 (400 kDa, Complex)
- Antibody fab light chain (23 kDa, Protein from Homo sapiens)
- Influenza virus neuraminidase (Complex from Influenza B virus)
- Neuraminidase (50 kDa, Protein from Influenza B virus)