Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 7ado
Q-score: 0.458
Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS
eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
- Unassigned helix (1 kDa, Protein from Homo sapiens)
- Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7adp
Q-score: 0.43
Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS
eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]
- Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
- Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7kra
Q-score: 0.474
Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS
eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]
- Endoplasmic reticulum membrane protein complex (Complex from Saccharomyces cerevisiae)
- Er membrane protein complex subunit 4 (21 kDa, Protein from Saccharomyces cerevisiae)
- Er membrane protein complex subunit 3 (28 kDa, Protein from Saccharomyces cerevisiae)
- Protein sop4 (26 kDa, Protein from Saccharomyces cerevisiae)
- Fab dh4 light chain (25 kDa, Protein from Homo sapiens)
- S. cerevisiae endoplasmic reticulum membrane protein complex (emc) bound to fab dh4 in yeast total extract lipid nanodiscs (Complex)
- [(2~{r})-1-octanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] nonanoate (524 Da, Ligand)
- Er membrane protein complex subunit 1 (87 kDa, Protein from Saccharomyces cerevisiae)
- Endoplasmic reticulum membrane protein complex subunit 10 (22 kDa, Protein from Saccharomyces cerevisiae)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Unassigned helix (2 kDa, Protein from Saccharomyces cerevisiae)
- Er membrane protein complex subunit 2 (33 kDa, Protein from Saccharomyces cerevisiae)
- Fab dh4 heavy chain (26 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Saccharomyces cerevisiae)
- Er membrane protein complex subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
- Fab dh4 (Complex from Homo sapiens)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7ktx
Q-score: 0.287
Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS
eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]
- Er membrane protein complex subunit 3 (28 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Fab dh4 light chain (25 kDa, Protein from Homo sapiens)
- S. cerevisiae endoplasmic reticulum membrane protein complex (emc) bound to fab in ddm detergent (Complex)
- Er membrane protein complex subunit 2 (33 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Er membrane protein complex subunit 4 (21 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Er membrane protein complex subunit 1 (87 kDa, Protein from Saccharomyces cerevisiae BY4743)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Endoplasmic reticulum membrane protein complex subunit 10 (22 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Endoplasmic reticulum membrane protein complex (Complex from Saccharomyces cerevisiae BY4743)
- Protein sop4 (26 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Fab dh4 heavy chain (26 kDa, Protein from Homo sapiens)
- Unassigned helix (2 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Er membrane protein complex subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae BY4743)
- Fab dh4 (Complex from Homo sapiens)