Cryo-EM structure of respiratory complex I from Yarrowia lipolytica
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 6gcs
Q-score: 0.371
Parey K, Brandt U, Xie H, Mills DJ, Siegmund K, Vonck J, Kuehlbrandt W, Zickermann V
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39213 Pubmed: 30277212 ]
- Ni9m subunit (7 kDa, Protein from Yarrowia lipolytica)
- Nipm subunit (10 kDa, Protein from Yarrowia lipolytica)
- Ni8m subunit (9 kDa, Protein from Yarrowia lipolytica)
- Nuxm subunit (18 kDa, Protein from Yarrowia lipolytica)
- Unknown subunit (4 kDa, Protein from Yarrowia lipolytica)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nuym subunit (18 kDa, Protein from Yarrowia lipolytica)
- 30-kda protein (nugm) (32 kDa, Protein from Yarrowia lipolytica)
- Nb5m subunit (10 kDa, Protein from Yarrowia lipolytica)
- Nd4 subunit (nu4m) (54 kDa, Protein from Yarrowia lipolytica)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
- 24-kda subunit (nuhm) (27 kDa, Protein from Yarrowia lipolytica)
- 49-kda protein (nucm) (52 kDa, Protein from Yarrowia lipolytica)
- Nd4l subunit (nulm) (9 kDa, Protein from Yarrowia lipolytica)
- Nd2 subunit (nu2m) (53 kDa, Protein from Yarrowia lipolytica)
- Nb8m subunit (11 kDa, Protein from Yarrowia lipolytica)
- Nb4m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Nesm subunit (13 kDa, Protein from Yarrowia lipolytica)
- Acpm2 subunit (14 kDa, Protein from Yarrowia lipolytica)
- 51-kda protein (nubm) (53 kDa, Protein from Yarrowia lipolytica)
- Nuzm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Nd6 subunit (nu6m) (20 kDa, Protein from Yarrowia lipolytica)
- Tyky subunit (nuim) (25 kDa, Protein from Yarrowia lipolytica)
- Nufm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Nb6m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Nidm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Nuum subunit (3 kDa, Protein from Yarrowia lipolytica)
- Nimm subunit (9 kDa, Protein from Yarrowia lipolytica)
- Nupm subunit (19 kDa, Protein from Yarrowia lipolytica)
- Ni2m subunit (12 kDa, Protein from Yarrowia lipolytica)
- Nujm subunit (20 kDa, Protein from Yarrowia lipolytica)
- Psst subunit (nukm) (23 kDa, Protein from Yarrowia lipolytica)
- Nebm subunit (5 kDa, Protein from Yarrowia lipolytica)
- N7bm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Nb2m subunit (6 kDa, Protein from Yarrowia lipolytica)
- 75-kda protein (nuam) (79 kDa, Protein from Yarrowia lipolytica)
- Mitochondrial nadh:ubiquinone oxidoreductase (963 MDa, Complex from Yarrowia lipolytica)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nd5 subunit (nu5m) (73 kDa, Protein from Yarrowia lipolytica)
- Niam subunit (8 kDa, Protein from Yarrowia lipolytica)
- Zinc ion (65 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Nunm subunit (7 kDa, Protein from Yarrowia lipolytica)
- Nd3 subunit (nu3m) (14 kDa, Protein from Yarrowia lipolytica)
- Nuem subunit (42 kDa, Protein from Yarrowia lipolytica)
- Nd1 subunit (nu1m) (38 kDa, Protein from Yarrowia lipolytica)
- Iron/sulfur cluster (351 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Acpm1 subunit (12 kDa, Protein from Yarrowia lipolytica)
- Numm subunit (15 kDa, Protein from Yarrowia lipolytica)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6f36
Q-score: 0.306
Klusch N, Murphy BJ, Mills DJ, Yildiz O, Kuhlbrandt W
eLife (2017) 6 [ Pubmed: 29210357 DOI: doi:10.7554/eLife.33274 ]
- Mitochondrial atp synthase subunit asa6 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Polytommella mitochondrial atp synthase fo complex (110 kDa, Complex from Polytomella sp. Pringsheim 198.80)
- Mitochondrial atp synthase subunit c (12 kDa, Protein from Polytomella sp. Pringsheim 198.80)
- Mitochondrial atp synthase subunit 6 (34 kDa, Protein from Polytomella sp. Pringsheim 198.80)
CryoEM structure of the membrane pore complex of Pneumolysin at 4.5A
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 5ly6
Q-score: 0.259
van Pee K, Neuhaus A, D'Imprima E, Mills DJ, Kuhlbrandt W, Yildiz O
eLife (2017) 6 [ Pubmed: 28323617 DOI: doi:10.7554/eLife.23644 ]
Resolution: 9.1 Å
EM Method: Single-particle
Fitted PDBs: 5luf
Q-score: 0.116
Sousa JS, Mills DJ, Vonck J, Kuhlbrandt W
eLife (2016) 5 [ Pubmed: 27830641 DOI: doi:10.7554/eLife.21290 ]
- Cytochrome c oxidase subunit 3 (29 kDa, Protein from Bos taurus)
- Complex i (13 kDa, Protein from Bos taurus)
- Complex i (26 kDa, Protein from Bos taurus)
- Complex i (4 kDa, Protein from Bos taurus)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (7 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 9 (7 kDa, Protein from Bos taurus)
- Complex i (38 kDa, Protein from Bos taurus)
- Complex i (6 kDa, Protein from Bos taurus)
- Complex i (7 kDa, Protein from Bos taurus)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome c oxidase subunit 7b, mitochondrial (6 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 6a2, mitochondrial (9 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 7a1, mitochondrial (6 kDa, Protein from Bos taurus)
- Complex i (13 kDa, Protein from Bos taurus)
- Heme c (618 Da, Ligand)
- Complex i (28 kDa, Protein from Bos taurus)
- Cytochrome c1, heme protein, mitochondrial (27 kDa, Protein from Bos taurus)
- Complex i (18 kDa, Protein from Bos taurus)
- Cytochrome b (42 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 6b1 (10 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 10 (6 kDa, Protein from Bos taurus)
- Complex i (29 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 1, mitochondrial (49 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 7c, mitochondrial (5 kDa, Protein from Bos taurus)
- Complex i (9 kDa, Protein from Bos taurus)
- Complex i (25 kDa, Protein from Bos taurus)
- Complex i (6 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 5a, mitochondrial (12 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 6c (8 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 8b, mitochondrial (4 kDa, Protein from Bos taurus)
- Complex i (51 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 8 (9 kDa, Protein from Bos taurus)
- Heme-a (852 Da, Ligand)
- Complex i (46 kDa, Protein from Bos taurus)
- Respirasome (1 MDa, Complex from Bos taurus)
- Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (17 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- Complex i (7 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 5b, mitochondrial (10 kDa, Protein from Bos taurus)
- Complex i (9 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 2, mitochondrial (46 kDa, Protein from Bos taurus)
- Complex i (32 kDa, Protein from Bos taurus)
- Zinc ion (65 Da, Ligand)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (21 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 6, mitochondrial (9 kDa, Protein from Bos taurus)
- Cytochrome c oxidase subunit 1 (57 kDa, Protein from Bos taurus)
- Complex i (12 kDa, Protein from Bos taurus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Complex i (70 kDa, Protein from Bos taurus)
- Complex i (53 kDa, Protein from Bos taurus)
- Complex i (6 kDa, Protein from Bos taurus)
- Cytochrome b-c1 complex subunit 7 (13 kDa, Protein from Bos taurus)
- Complex i (13 kDa, Protein from Bos taurus)
- Iron/sulfur cluster (351 Da, Ligand)
- Complex i (12 kDa, Protein from Bos taurus)
- Complex i (6 kDa, Protein from Bos taurus)
- Complex i (35 kDa, Protein from Bos taurus)
- Complex i (14 kDa, Protein from Bos taurus)
Electron cryo-microscopy of F420-reducing [NiFe] hydrogenase Frh
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 4ci0
Q-score: 0.511
Allegretti M, Mills DJ, McMullan G, Kuehlbrandt W, Vonck J
eLife (2014) 3 pp. e01963-e01963 [ DOI: doi:10.7554/eLife.01963 Pubmed: 24569482 ]
- F420 reducing hydrogenase (1 MDa, Sample)
- F420-reducing hydrogenase, subunit gamma (300 kDa, Protein from Methanothermobacter marburgensis)
- F420-reducing hydrogenase, subunit beta (300 kDa, Protein from Methanothermobacter marburgensis)
- F420-reducing hydrogenase, subunit alpha (440 kDa, Protein from Methanothermobacter marburgensis)