Cryo-EM structure of the E. coli cytochrome bd-I oxidase at 2.68 A resolution
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 6rko
Q-score: 0.665
Safarian S, Hahn A, Mills DJ, Radloff M, Eisinger ML, Nikolaev A, Meier-Credo J, Melin F, Miyoshi H, Gennis RB, Sakamoto J, Langer JD, Hellwig P, Kuhlbrandt W, Michel H
Science (2019) 366 pp. 100-104 [ Pubmed: 31604309 DOI: doi:10.1126/science.aay0967 ]
- Ubiquinone-8 (727 Da, Ligand)
- Cis-heme d hydroxychlorin gamma-spirolactone (632 Da, Ligand)
- Uncharacterized protein ynhf (2 kDa, Protein from Escherichia coli (strain K12))
- Cytochrome bd-i oxidase from e. coli (107 kDa, Complex from Escherichia coli K-12)
- Cytochrome bd-i ubiquinol oxidase subunit 1 (58 kDa, Protein from Escherichia coli (strain K12))
- Cytochrome bd-i ubiquinol oxidase subunit x (4 kDa, Protein from Escherichia coli (strain K12))
- Cytochrome bd-i ubiquinol oxidase subunit 2 (42 kDa, Protein from Escherichia coli (strain K12))
- Heme b/c (618 Da, Ligand)
- Water (18 Da, Ligand)
- Oxygen molecule (31 Da, Ligand)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
Chloroplast F1Fo conformation 1
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 6fkf
Q-score: 0.409
Hahn A, Vonck J, Mills DJ, Meier T, Kuhlbrandt W
Science (2018) 360 [ Pubmed: 29748256 DOI: doi:10.1126/science.aat4318 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chloroplast atp synthase (600 kDa, Complex from Spinacia oleracea)
- Atp synthase subunit a, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit c, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b', chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
Chloroplast F1Fo conformation 2
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6fkh
Q-score: 0.279
Hahn A, Vonck J, Mills DJ, Meier T, Kuhlbrandt W
Science (2018) 360 [ Pubmed: 29748256 DOI: doi:10.1126/science.aat4318 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chloroplast atp synthase (600 kDa, Complex from Spinacia oleracea)
- Atp synthase subunit a, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit c, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b', chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Chloroplast F1Fo conformation 3
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6fki
Q-score: 0.253
Hahn A, Vonck J, Mills DJ, Meier T, Kuhlbrandt W
Science (2018) 360 [ Pubmed: 29748256 DOI: doi:10.1126/science.aat4318 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chloroplast atp synthase (600 kDa, Complex from Spinacia oleracea)
- Atp synthase subunit a, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit alpha, chloroplastic (55 kDa, Protein from Spinacia oleracea)
- Atp synthase epsilon chain, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Atp synthase gamma chain, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit c, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Atp synthase delta chain, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit beta, chloroplastic (53 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Atp synthase subunit b', chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Magnesium ion (24 Da, Ligand)