The isolated Vo domain of V/A-ATPase from Thermus thermophilus.
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ywt
Q-score: 0.476
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- V-type atp synthase, subunit k (10 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- The isolated vo domain of v/a-atpase from thermus thermophilus (300 kDa, Complex from Thermus thermophilus HB8)
- Water (18 Da, Ligand)
Vo domain of V/A-ATPase from Thermus thermophilus state1
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8yxz
Q-score: 0.452
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- Vo domain of v/a-atpase from thermus thermophilus. (300 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase, subunit k (10 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
Vo domain of V/A-ATPase from Thermus thermophilus state2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8yy0
Q-score: 0.442
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- Vo domain of v/a-atpase from thermus thermophilus. (300 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase, subunit k (10 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
Vo domain of V/A-ATPase from Thermus thermophilus state3
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8yy1
Q-score: 0.302
Kishikawa JI, Nishida Y, Nakano A, Kato T, Mitsuoka K, Okazaki KI, Yokoyama K
Nat Commun (2024) 15 pp. 9883-9883 [ Pubmed: 39567487 DOI: doi:10.1038/s41467-024-53504-x ]
- V-type atp synthase, subunit k (7 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
- Vo domain of v/a-atpase from thermus thermophilus. (300 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase subunit i (71 kDa, Protein from Thermus thermophilus HB8)
Cryo-electron tomography of optogenetically-induced lamellipodia
Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T
bioRxiv (2024) [ DOI: doi:10.1101/2024.08.13.607852 ]
Cryo-electron tomography of optogenetically-induced lamellipodia
Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T
bioRxiv (2024) [ DOI: doi:10.1101/2024.08.13.607852 ]
Cryo-electron tomography of optogenetically-induced lamellipodia
Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T
bioRxiv (2024) [ DOI: doi:10.1101/2024.08.13.607852 ]
Cryo-electron tomography of optogenetically-induced lamellipodia
Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T
bioRxiv (2024) [ DOI: doi:10.1101/2024.08.13.607852 ]
V/A-ATPase from Thermus thermophilus
Kishikawa JI, Nakanishi A, Furuta A, Kato T, Namba K, Tamakoshi M, Mitsuoka K, Yokoyama K
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56862 Pubmed: 32639230 ]
- V/a-type atpase (650 MDa, Complex from Thermus thermophilus HB8)
V1-ATPase built from cryo-EM map of V/A-ATPase from Thermus thermophilus.
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ly8
Q-score: 0.529
Kishikawa JI, Nakanishi A, Furuta A, Kato T, Namba K, Tamakoshi M, Mitsuoka K, Yokoyama K
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56862 Pubmed: 32639230 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Soluble domain of v/a-atpase including v1, d, two eg stalks, and n-terminal of a-subunit (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)