Resolution: 2.98 Å
EM Method: Helical reconstruction
Fitted PDBs: 9az6
Q-score: 0.485
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- F-actin (Complex from Oryctolagus cuniculus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- F-actin-talin(r13-dd) complex (Complex)
- Talin-1 (26 kDa, Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
F-actin-Talin(R13-DD) complex, half-decorated
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- F-actin (Complex from Oryctolagus cuniculus)
- F-actin-talin(r13-dd) complex (Complex)
- Talin(r13-dd) (Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- F-actin (acta1) (Protein from Oryctolagus cuniculus)
F-actin-Talin(R13-DD) complex, single-decorated
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- F-actin (Complex from Oryctolagus cuniculus)
- F-actin-talin(r13-dd) complex (Complex)
- Talin(r13-dd) (Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- F-actin (acta1) (Protein from Oryctolagus cuniculus)
Human platelets in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertümpfel C, Mizuno N
Nat Commun (2023) 14 [ DOI: 10.1038/s41467-023-36279-5 Pubmed: 36739444 ]
Image sets:
Tomogram of platelet filopodia in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
Tomogram of platelet protrusion with microtubule in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
SARS-CoV-2 spike protein closed conformation
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7xmc
Q-score: 0.526
Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y
Nat Commun (2022) 13 pp. 7591-7591 [ Pubmed: 36481732 DOI: doi:10.1038/s41467-022-34771-y ]
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- Heme o (838 Da, Ligand)
- Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
- Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Unknown atom or ion (744 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 7xmd
Q-score: 0.535
Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y
Nat Commun (2022) 13 pp. 7591-7591 [ Pubmed: 36481732 DOI: doi:10.1038/s41467-022-34771-y ]
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- Heme o (838 Da, Ligand)
- Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
- Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate (253 Da, Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Unknown atom or ion (Ligand)
Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertumpfel C, Mizuno N
J Cell Biol (2022) 221 [ Pubmed: 35262630 DOI: doi:10.1083/jcb.202106086 ]