Resolution: 2.98 Å
EM Method: Helical reconstruction
Fitted PDBs: 9az6
Q-score: 0.485
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Talin(r13-dd) (Complex from Mus musculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- Talin-1 (26 kDa, Protein from Mus musculus)
- F-actin-talin(r13-dd) complex (Complex)
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7xmc
Q-score: 0.526
Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y
Nat Commun (2022) 13 pp. 7591-7591 [ DOI: doi:10.1038/s41467-022-34771-y Pubmed: 36481732 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Unknown atom or ion (744 Da, Ligand)
- Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 7xmd
Q-score: 0.535
Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y
Nat Commun (2022) 13 pp. 7591-7591 [ DOI: doi:10.1038/s41467-022-34771-y Pubmed: 36481732 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
- Unknown atom or ion (Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate (253 Da, Ligand)
- Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
Cryo-EM structure of human integrin alpha5beta1 in the half-bent conformation
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nxd
Q-score: 0.119
Schumacher S, Dedden D, Nunez RV, Matoba K, Takagi J, Biertumpfel C, Mizuno N
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abe9716 Pubmed: 33962943 ]
- Dimeric complex of integrin a5b1 (200 kDa, Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Integrin alpha-5 (110 kDa, Protein from Homo sapiens)
- Integrin beta-1 (86 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nwl
Q-score: 0.296
Schumacher S, Dedden D, Nunez RV, Matoba K, Takagi J, Biertumpfel C, Mizuno N
Sci Adv (2021) 7 [ DOI: doi:10.1126/sciadv.abe9716 Pubmed: 33962943 ]
- Manganese (ii) ion (54 Da, Ligand)
- Integrin alpha-5 (110 kDa, Protein from Homo sapiens)
- Ternary complex of integrin a5b1, fibronectin and ts2/16 fv-clasp (210 kDa, Complex from Homo sapiens)
- Ts2/16 vh(s112c)-sarah chimera (19 kDa, Protein from Mus musculus)
- Ts2/16 vl-sarah(s37c) chimera (18 kDa, Protein from Mus musculus)
- Integrin beta-1 (86 kDa, Protein from Homo sapiens)
- Isoform 1 of fibronectin (39 kDa, Protein from Homo sapiens)
Cryo-EM structure of autoinhibited human talin-1
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 6r9t
Q-score: 0.181
Dedden D, Schumacher S, Kelley CF, Zacharias M, Biertumpfel C, Fassler R, Mizuno N
Cell (2019) 179 pp. 120-131.e13 [ Pubmed: 31539492 DOI: doi:10.1016/j.cell.2019.08.034 ]
- Talin-1 (270 kDa, Protein from Homo sapiens)
- Talin-1 (Complex from Homo sapiens)