SARS-CoV-2 Omicron spike in complex with 5817 Fab
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8khc
Q-score: 0.351
Wang Y, Zhang Z, Yang M, Xiong X, Yan Q, Cao L, Wei P, Zhang Y, Zhang L, Lv K, Chen J, Liu X, Zhao X, Xiao J, Zhang S, Zhu A, Gan M, Zhang J, Cai R, Zhuo J, Zhang Y, Rao H, Qu B, Zhang Y, Chen L, Dai J, Cheng L, Hu Q, Chen Y, Lv H, So RTY, Peiris M, Zhao J, Liu X, Mok CKP, Wang X, Zhao J
Cell Rep (2024) 43 pp. 113653-113653 [ DOI: doi:10.1016/j.celrep.2023.113653 Pubmed: 38175758 ]
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 5817 fab (13 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Light chain of 5817 fab (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron spike in complex with 5817 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
The interface structure of Omicron RBD binding to 5817 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8khd
Q-score: 0.393
Wang Y, Zhang Z, Yang M, Xiong X, Yan Q, Cao L, Wei P, Zhang Y, Zhang L, Lv K, Chen J, Liu X, Zhao X, Xiao J, Zhang S, Zhu A, Gan M, Zhang J, Cai R, Zhuo J, Zhang Y, Rao H, Qu B, Zhang Y, Chen L, Dai J, Cheng L, Hu Q, Chen Y, Lv H, So RTY, Peiris M, Zhao J, Liu X, Mok CKP, Wang X, Zhao J
Cell Rep (2024) 43 pp. 113653-113653 [ DOI: doi:10.1016/j.celrep.2023.113653 Pubmed: 38175758 ]
- The interface structure of omicron rbd binding to 5817 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 5817 (11 kDa, Protein from Homo sapiens)
- Heavy chain of 5817 (13 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of 3A10 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8ez3
Q-score: 0.613
Lei R, Kim W, Lv H, Mou Z, Scherm MJ, Schmitz AJ, Turner JS, Tan TJC, Wang Y, Ouyang WO, Liang W, Rivera-Cardona J, Teo C, Graham CS, Brooke CB, Presti RM, Mok CKP, Krammer F, Dai X, Ellebedy AH, Wu NC
Immunity (2023) 56 pp. 2621- [ DOI: doi:10.1016/j.immuni.2023.10.005 Pubmed: 37967533 ]
- Heavy chain of influenza virus neuraminidase antibody 3a10 (13 kDa, Protein from Homo sapiens)
- Structure of 3a10 fab in complex with a/moscow/10/1999 (h3n2) influenza virus neuraminidase (Complex from Influenza A virus)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Light chain of influenza virus neuraminidase antibody 3a10 (11 kDa, Protein from Homo sapiens)
- Neuraminidase (42 kDa, Protein from Influenza A virus (A/Moscow/10/1999(H3N2)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of 1F04 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ez7
Q-score: 0.638
Lei R, Kim W, Lv H, Mou Z, Scherm MJ, Schmitz AJ, Turner JS, Tan TJC, Wang Y, Ouyang WO, Liang W, Rivera-Cardona J, Teo C, Graham CS, Brooke CB, Presti RM, Mok CKP, Krammer F, Dai X, Ellebedy AH, Wu NC
Immunity (2023) 56 pp. 2621- [ DOI: doi:10.1016/j.immuni.2023.10.005 Pubmed: 37967533 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Neuraminidase (42 kDa, Protein from Influenza A virus (A/Moscow/10/1999(H3N2)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of influenza virus neuraminidase antibody 1f04 (13 kDa, Protein from Homo sapiens)
- Light chain of influenza virus neuraminidase antibody 1f04 (11 kDa, Protein from Homo sapiens)
- Structure of 1f04 fab in complex with a/moscow/10/1999 (h3n2) influenza virus neuraminidase (Complex from Influenza A virus)
Structure of 3C08 Fab in complex with A/Moscow/10/1999 (H3N2) influenza virus neuraminidase
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8ez8
Q-score: 0.571
Lei R, Kim W, Lv H, Mou Z, Scherm MJ, Schmitz AJ, Turner JS, Tan TJC, Wang Y, Ouyang WO, Liang W, Rivera-Cardona J, Teo C, Graham CS, Brooke CB, Presti RM, Mok CKP, Krammer F, Dai X, Ellebedy AH, Wu NC
Immunity (2023) 56 pp. 2621- [ DOI: doi:10.1016/j.immuni.2023.10.005 Pubmed: 37967533 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Heavy chain of influenza virus neuraminidase antibody 3c08 (13 kDa, Protein from Homo sapiens)
- Neuraminidase (42 kDa, Protein from Influenza A virus (A/Moscow/10/1999(H3N2)))
- Light chain of influenza virus neuraminidase antibody 3c08 (11 kDa, Protein from Homo sapiens)
- Structure of 3c08 fab in complex with a/moscow/10/1999 (h3n2) influenza virus neuraminidase (Complex from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)