SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8bcz
Q-score: 0.564
Dijokaite-Guraliuc A, Das R, Zhou D, Ginn HM, Liu C, Duyvesteyn HME, Huo J, Nutalai R, Supasa P, Selvaraj M, de Silva TI, Plowright M, Newman TAH, Hornsby H, Mentzer AJ, Skelly D, Ritter TG, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Roemer C, Peacock TP, Paterson NG, Williams MA, Hall DR, Fry EE, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Rep (2023) 42 pp. 112271-112271 [ DOI: doi:10.1016/j.celrep.2023.112271 Pubmed: 36995936 ]
- Ba.2-23 light chain (11 kDa, Protein from Homo sapiens)
- Ba.2-36 heavy chain (13 kDa, Protein from Homo sapiens)
- Covox-45 heavy chain (24 kDa, Protein from Homo sapiens)
- Ey6a heavy chain (13 kDa, Protein from Homo sapiens)
- Complex of sars-cov2 delta variant receptor binding domain with 4 fabs (Complex)
- Ba.2-23 heavy chain (12 kDa, Protein from Homo sapiens)
- Ba.2-36 light chain (11 kDa, Protein from Homo sapiens)
- Ey6a light chain (11 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Antibody chains (Complex from Homo sapiens)
- Sars-cov2 delta variant receptor binding domain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Covox-45 light chain (11 kDa, Protein from Homo sapiens)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7q6e
Q-score: 0.523
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-49 light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Beta-49 heavy chain (23 kDa, Protein from Homo sapiens)
- Beta049 fab in complex with sars-cov2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Beta-50 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7q9f
Q-score: 0.366
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- Beta-50 heavy chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Beta-50 light chain (23 kDa, Protein from Homo sapiens)
- Beta-50 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
COVOX-222 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7q9g
Q-score: 0.341
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- Covox-222 heavy chain (12 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Covox-222 light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Covox-222 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7q9i
Q-score: 0.161
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- Beta-43 light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Beta-43 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-43 heavy chain (24 kDa, Protein from Homo sapiens)
Beta-26 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7q9j
Q-score: 0.253
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ DOI: doi:10.1016/j.chom.2021.11.013 Pubmed: 34921776 ]
- Beta-26 light chain (22 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-26 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-26 heavy chain (24 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Beta-32 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7q9k
Q-score: 0.12
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-32 light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Beta-32 heavy chain (24 kDa, Protein from Homo sapiens)
- Beta-32 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
Beta-53 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7q9m
Q-score: 0.325
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ DOI: doi:10.1016/j.chom.2021.11.013 Pubmed: 34921776 ]
- Beta-53 fab light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-53 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Beta-53 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Beta-06 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7q9p
Q-score: 0.155
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ DOI: doi:10.1016/j.chom.2021.11.013 Pubmed: 34921776 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-06 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-06 light chain (23 kDa, Protein from Homo sapiens)
- Beta-06 heavy chain (24 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7nd3
Q-score: 0.363
Dejnirattisai W, Zhou D, Ginn HM, Duyvesteyn HME, Supasa P, Case JB, Zhao Y, Walter TS, Mentzer AJ, Liu C, Wang B, Paesen GC, Slon-Campos J, Lopez-Camacho C, Kafai NM, Bailey AL, Chen RE, Ying B, Thompson C, Bolton J, Fyfe A, Gupta S, Tan TK, Gilbert-Jaramillo J, James W, Knight M, Carroll MW, Skelly D, Dold C, Peng Y, Levin R, Dong T, Pollard AJ, Knight JC, Klenerman P, Temperton N, Hall DR, Williams MA, Paterson NG, Bertram FKR, Siebert CA, Clare DK, Howe A, Radecke J, Song Y, Townsend AR, Huang KA, Fry EE, Mongkolsapaya J, Diamond MS, Ren J, Stuart DI, Screaton GR
Cell (2021) 184 pp. 2183- [ DOI: doi:10.1016/j.cell.2021.02.032 Pubmed: 33756110 ]
- Complex of sars-cov-2 spike glycoprotein with covox-40 fab (488 kDa, Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Covox-40 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Covox-40 light chain (24 kDa, Protein from Homo sapiens)
- Covox-40 heavy chain (25 kDa, Protein from Homo sapiens)