SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8bcz
Q-score: 0.564
Dijokaite-Guraliuc A, Das R, Zhou D, Ginn HM, Liu C, Duyvesteyn HME, Huo J, Nutalai R, Supasa P, Selvaraj M, de Silva TI, Plowright M, Newman TAH, Hornsby H, Mentzer AJ, Skelly D, Ritter TG, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Roemer C, Peacock TP, Paterson NG, Williams MA, Hall DR, Fry EE, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Rep (2023) 42 pp. 112271-112271 [ DOI: doi:10.1016/j.celrep.2023.112271 Pubmed: 36995936 ]
- Complex of sars-cov2 delta variant receptor binding domain with 4 fabs (Complex)
- Ba.2-36 heavy chain (13 kDa, Protein from Homo sapiens)
- Covox-45 heavy chain (24 kDa, Protein from Homo sapiens)
- Antibody chains (Complex from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ba.2-23 light chain (11 kDa, Protein from Homo sapiens)
- Covox-45 light chain (11 kDa, Protein from Homo sapiens)
- Ba.2-36 light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov2 delta variant receptor binding domain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (13 kDa, Protein from Homo sapiens)
- Ey6a light chain (11 kDa, Protein from Homo sapiens)
- Ba.2-23 heavy chain (12 kDa, Protein from Homo sapiens)
OMI-42 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zr7
Q-score: 0.258
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- Spike glycoprotein,fibritin (141 kDa, Protein from Tequatrovirus T4)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-42 light chain (11 kDa, Protein from Homo sapiens)
- Omi-42 fab (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omi-42 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-42 heavy chain (13 kDa, Protein from Homo sapiens)
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zr8
Q-score: 0.47
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-38 fab heavy chain (12 kDa, Protein from Homo sapiens)
- Omi-38 fab light chain (11 kDa, Protein from Homo sapiens)
- Omi-38 fab (Complex from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omi-38 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
OMI-2 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7zr9
Q-score: 0.259
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- Omi-2 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-2 fab (Complex from Homo sapiens)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-2 fab light chain (11 kDa, Protein from Homo sapiens)
- Omi-2 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7zrc
Q-score: 0.394
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- Omi-38 fab light chain (11 kDa, Protein from Homo sapiens)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-38 fab (Complex from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omi-38 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-38 fab heavy chain (12 kDa, Protein from Homo sapiens)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7q6e
Q-score: 0.523
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta049 fab in complex with sars-cov2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-49 heavy chain (23 kDa, Protein from Homo sapiens)
- Beta-49 light chain (23 kDa, Protein from Homo sapiens)
Beta-50 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7q9f
Q-score: 0.366
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Beta-50 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-50 light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-50 heavy chain (23 kDa, Protein from Homo sapiens)
COVOX-222 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7q9g
Q-score: 0.341
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ Pubmed: 34921776 DOI: doi:10.1016/j.chom.2021.11.013 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Covox-222 light chain (11 kDa, Protein from Homo sapiens)
- Covox-222 heavy chain (12 kDa, Protein from Homo sapiens)
- Covox-222 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7q9i
Q-score: 0.161
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ DOI: doi:10.1016/j.chom.2021.11.013 Pubmed: 34921776 ]
- Beta-43 heavy chain (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-43 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-43 light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Beta-26 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7q9j
Q-score: 0.253
Liu C, Zhou D, Nutalai R, Duyvesteyn HME, Tuekprakhon A, Ginn HM, Dejnirattisai W, Supasa P, Mentzer AJ, Wang B, Case JB, Zhao Y, Skelly DT, Chen RE, Johnson SA, Ritter TG, Mason C, Malik T, Temperton N, Paterson NG, Williams MA, Hall DR, Clare DK, Howe A, Goulder PJR, Fry EE, Diamond MS, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Host Microbe (2022) 30 pp. 53- [ DOI: doi:10.1016/j.chom.2021.11.013 Pubmed: 34921776 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Beta-26 heavy chain (24 kDa, Protein from Homo sapiens)
- Beta-26 fab in complex with sars-cov-2 beta-spike glycoprotein (475 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Beta-26 light chain (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)