MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8c9n
Q-score: 0.544
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ Pubmed: 38075238 DOI: doi:10.1093/abt/tbad024 ]
Buzas D, Bunzel AH, Staufer O, Milodowski EJ, Edmunds GL, Bufton JC, Vidana Mateo BV, Yadav SKN, Gupta K, Fletcher C, Williamson MK, Harrison A, Borucu U, Capin J, Francis O, Balchin G, Hall S, Vega MV, Durbesson F, Lingappa S, Vincentelli R, Roe J, Wooldridge L, Burt R, Anderson RJL, Mulholland AJ, Hare J, Bailey M, Davidson AD, Finn A, Morgan D, Mann J, Spatz J, Garzoni F, Schaffitzel C, Berger I
Antib Ther (2023) 6 pp. 277-297 [ Pubmed: 38075238 DOI: doi:10.1093/abt/tbad024 ]
- Adah11 (Complex from Lama glama)
- Addocov-adah11 (Complex from Human adenovirus B3)
Hutchins GH, Noble CEM, Bunzel HA, Williams C, Dubiel P, Yadav SKN, Molinaro PM, Barringer R, Blackburn H, Hardy BJ, Parnell AE, Landau C, Race PR, Oliver TAA, Koder RL, Crump MP, Schaffitzel C, Oliveira ASF, Mulholland AJ, Anderson JLR
PNAS (2023) 120 pp. e2306046120-e2306046120 [ DOI: doi:10.1073/pnas.2306046120 Pubmed: 37487099 ]
- Holo e4d2 (Complex from synthetic construct)
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C3 symmetry
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7od3
Q-score: 0.622
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ Pubmed: 35017512 DOI: doi:10.1038/s41467-021-27881-6 ]
- Linoleic acid (280 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c3 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C1 symmetry
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7odl
Q-score: 0.595
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I
Nat Commun (2022) 13 pp. 222-222 [ Pubmed: 35017512 DOI: doi:10.1038/s41467-021-27881-6 ]
- Sars cov-2 spike protein, bristol uk deletion variant, closed conformation, c1 symmetry (Complex from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS CoV-2 Spike protein, Closed conformation, C1 symmetry
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 6zb4
Q-score: 0.587
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ Pubmed: 32958580 DOI: doi:10.1126/science.abd3255 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars cov-2 spike protein, closed conformation, c1 symmetry (540 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Closed conformation, C3 symmetry
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 6zb5
Q-score: 0.619
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ DOI: doi:10.1126/science.abd3255 Pubmed: 32958580 ]
- Sars cov-2 spike protein, closed conformation, c3 symmetry (540 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Linoleic acid (280 Da, Ligand)
SARS CoV-2 Spike protein, Open conformation
Toelzer C, Gupta K, Yadav SKN, Borucu U, Davidson AD, Kavanagh Williamson M, Shoemark DK, Garzoni F, Staufer O, Milligan R, Capin J, Mulholland AJ, Spatz J, Fitzgerald D, Berger I, Schaffitzel C
Science (2020) 370 pp. 725-730 [ Pubmed: 32958580 DOI: doi:10.1126/science.abd3255 ]