Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g9s
Q-score: 0.401
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Rna (42-mer) (13 kDa, RNA from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Cas8 (45 kDa, Protein from Neisseria lactamica)
- Binary complex of acric8 with crrna bound type i-c cascade (400 kDa, Complex from Neisseria lactamica)
- Acric8 (8 kDa, Protein from Rhodobacter phage RcNL1)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8g9t
Q-score: 0.391
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Acric9 (8 kDa, Protein from Rhodobacter phage RcNL1)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Binary complex of acric9 with crrna bound type i-c cascade (400 kDa, Complex from Neisseria lactamica)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8g9u
Q-score: 0.44
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Phosphate ion (94 Da, Ligand)
- Cas3 (84 kDa, Protein from Neisseria lactamica)
- Crispr-associated protein, csd1 family (64 kDa, Protein from Neisseria lactamica)
- Traget strand dna (53-mer) (16 kDa, DNA from Neisseria lactamica)
- Distal nontarget dna (5'-d(p*tp*tp*ap*tp*ap*tp*tp*ap*ap*tp*ap*tp*tp*ap*tp*ap*tp*tp*tp*a)-3') (6 kDa, DNA from Neisseria lactamica)
- Proximal nontarget strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (6 kDa, DNA from Neisseria lactamica)
- Crispr-associated protein, csd2 family (32 kDa, Protein from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Phage associated protein (14 kDa, Protein from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Pre-crrna processing endonuclease (23 kDa, Protein from Neisseria lactamica)
- Magnesium ion (24 Da, Ligand)
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8gaf
Q-score: 0.159
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Cas8 (64 kDa, Protein from Neisseria lactamica)
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8gam
Q-score: 0.16
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Non target strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*a)-3') (3 kDa, DNA from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Ternary complex of cas3 with dsdna bound type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Phage associated protein (64 kDa, Protein from Neisseria lactamica)
- Target strand dna (25-mer) (7 kDa, DNA from Neisseria lactamica)
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 8gan
Q-score: 0.227
Hu C, Myers MT, Zhou X, Hou Z, Lozen ML, Nam KH, Zhang Y, Ke A
Mol Cell (2024) 84 pp. 463-475.e5 [ Pubmed: 38242128 DOI: doi:10.1016/j.molcel.2023.12.034 ]
- Cas8 (64 kDa, Protein from Neisseria lactamica)
- Proximal non target strand dna (5'-d(p*ap*tp*gp*ap*ap*cp*tp*tp*cp*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (5 kDa, DNA from Neisseria lactamica)
- Cas11 (14 kDa, Protein from Neisseria lactamica)
- Cas7 (32 kDa, Protein from Neisseria lactamica)
- Distal non target strand dna (5'-d(p*ap*tp*tp*ap*tp*ap*tp*tp*ap*ap*tp*ap*tp*tp*ap*tp*ap*tp*tp*tp*a)-3') (6 kDa, DNA from Neisseria lactamica)
- Cas5 (23 kDa, Protein from Neisseria lactamica)
- Type i-c cascade at r-loop formation (400 kDa, Complex from Neisseria lactamica)
- Crrna (43-mer) (13 kDa, RNA from Neisseria lactamica)
- Target strand dna (53-mer) (16 kDa, DNA from Neisseria lactamica)
elongated Cascade complex from type I-A CRISPR-Cas system
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7r21
Q-score: 0.472
Ni D, Hu C, Nam KH, Terns M, Stahlberg H, Ke A
To Be Published
- Cas11a, cas7a and type i-a crispr-associated protein cas5 (Complex from Pyrococcus furiosus DSM 3638)
- Elongated cascade complex from pyrococcus furiosus type i-a crispr/cas system (550 kDa, Complex)
- Cas11a (12 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crrna (62-mer) (Complex from Escherichia coli)
- Cas7a (36 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crrna (62-mer) (19 kDa, RNA from Escherichia coli)
- Type i-a crispr-associated protein cas5 (29 kDa, Protein from Pyrococcus furiosus DSM 3638)
elongated Cascade complex from type I-A CRISPR-Cas system
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7r2k
Q-score: 0.324
Ni D, Hu C, Nam KH, Terns M, Stahlberg H, Ke A
To Be Published
- Nickel (ii) ion (58 Da, Ligand)
- Crrna (57-mer) (18 kDa, RNA from Escherichia coli)
- Dna (5'-d(p*tp*cp*cp*c)-3') (1 kDa, DNA from Escherichia coli)
- Elongated cascade complex from pyrococcus furiosus type i-a crispr/cas system (550 kDa, Complex)
- Cas8 (38 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Cas11a (12 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crispr-associated endonuclease cas3-hd (27 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Dna (5'-d(p*tp*ap*cp*ap*ap*gp*gp*gp*a)-3') (2 kDa, DNA from Escherichia coli)
- Cas7a (36 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Crispr-associated helicase cas3 (74 kDa, Protein from Pyrococcus furiosus DSM 3638)
- Type i-a crispr-associated protein cas5 (29 kDa, Protein from Pyrococcus furiosus DSM 3638)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8d97
Q-score: 0.407
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Rna (42-mer) (13 kDa, RNA from Candidatus Scalindua brodae)
- Apo gramp (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (184 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 8d9e
Q-score: 0.416
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*a)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-match pfs target (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (143 kDa, Protein from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)