Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8d97
Q-score: 0.407
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Rna (42-mer) (13 kDa, RNA from Candidatus Scalindua brodae)
- Apo gramp (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (184 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 8d9e
Q-score: 0.416
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*a)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-match pfs target (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (143 kDa, Protein from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8d9f
Q-score: 0.512
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein (142 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (77 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-tpr-chat craspase (Complex from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8d9g
Q-score: 0.547
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Chat domain protein (78 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-tpr-chat with non match pfs target rna craspase (Complex from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (147 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (7 kDa, RNA from Candidatus Scalindua brodae)
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8d9h
Q-score: 0.426
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Chat domain protein (76 kDa, Protein from Candidatus Scalindua brodae)
- Phosphate ion (94 Da, Ligand)
- Ramp superfamily protein (145 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-tpr-chat with match pfs target rna craspase (Complex from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
gRAMP non-matching PFS-with Mg
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8d9i
Q-score: 0.423
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Rna (35-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*a)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-non matching pfs-with mg (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (143 kDa, Protein from Candidatus Scalindua brodae)
gRAMP non-match PFS target RNA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8d8n
Q-score: 0.435
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*a)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Rna (35-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-non matching pfs target (Complex from Candidatus Scalindua brodae)