Cryo-EM structure of mouse heavy-chain apoferritin
Resolution: 1.09 Å
EM Method: Single-particle
Fitted PDBs: 8rqb
Q-score: 0.942
Kucukoglu B, Mohammed I, Guerrero-Ferreira RC, Ribet SM, Varnavides G, Leidl ML, Lau K, Nazarov S, Myasnikov A, Kube M, Radecke J, Sachse C, Muller-Caspary K, Ophus C, Stahlberg H
Nat Commun (2024) 15 pp. 8062-8062 [ DOI: doi:10.1038/s41467-024-52403-5 Pubmed: 39277607 ]
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ferritin heavy chain, n-terminally processed (20 kDa, Protein from Mus musculus)
- Apoferritin from mus musculus (Complex from Mus musculus)
- Fe (iii) ion (55 Da, Ligand)
BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8aqw
Q-score: 0.452
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ DOI: doi:10.1371/journal.ppat.1011206 Pubmed: 37018380 ]
- Mouse ace2 (Complex from Mus musculus)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, a allele (101 kDa, Protein from Mus musculus)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Sars-cov-2 ba.4/5 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ba.4/5 sars-cov-2 spike bound to mouse ace2 (local) (430 kDa, Complex)
BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local)
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8aqs
Q-score: 0.549
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ DOI: doi:10.1371/journal.ppat.1011206 Pubmed: 37018380 ]
- Water (18 Da, Ligand)
- Ba.4/5 sars-cov-2 spike bound to human ace2 (local) (430 kDa, Complex)
- Sars-cov-2 ba.4/5 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Human ace2 (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Processed angiotensin-converting enzyme 2 (101 kDa, Protein from Homo sapiens)
Beta SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8aqt
Q-score: 0.212
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ DOI: doi:10.1371/journal.ppat.1011206 Pubmed: 37018380 ]
- Mouse ace2 (Complex from Homo sapiens)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, membrane-bound form (101 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Beta sars-cov-2 spike bound to mouse ace2 (430 kDa, Complex)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Beta sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8aqu
Q-score: 0.332
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ DOI: doi:10.1371/journal.ppat.1011206 Pubmed: 37018380 ]
- Sars-cov2 ba1 bound to mouse ace2 (430 kDa, Complex)
- Sars-cov-2 ba.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Mouse ace2 (Complex from Mus musculus)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, membrane-bound form (101 kDa, Protein from Mus musculus)
BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8aqv
Q-score: 0.513
Ni D, Turelli P, Beckert B, Nazarov S, Uchikawa E, Myasnikov A, Pojer F, Trono D, Stahlberg H, Lau K
PLoS Pathog (2023) 19 pp. e1011206-e1011206 [ DOI: doi:10.1371/journal.ppat.1011206 Pubmed: 37018380 ]
- Sars-cov-2 ba.2.12.1 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Processed angiotensin-converting enzyme 2,ig gamma-2a chain c region, membrane-bound form (101 kDa, Protein from Mus musculus)
- Sars-cov2 ba.2.12.1 bound to mouse ace2 (430 kDa, Complex)
- Mouse ace2 (Complex from Mus musculus)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
Cryo-EM structure of a CRISPR effector in complex with regulator
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7zol
Q-score: 0.434
Ekundayo B, Torre D, Beckert B, Nazarov S, Myasnikov A, Stahlberg H, Ni D
Nat Struct Mol Biol (2023) 30 pp. 135-139 [ DOI: doi:10.1038/s41594-022-00894-5 Pubmed: 36471056 ]
- Cas7-11 (207 kDa, Protein from Desulfonema magnum)
- Grna (12 kDa, RNA from Desulfonema magnum)
- Zinc ion (65 Da, Ligand)
- Tpr-chat (17 kDa, Protein from Desulfonema magnum)
- Cas7-11 with trp-chat-ntd (220 kDa, Complex from Desulfonema magnum)
Cryo-EM structure of a CRISPR effector in complex with a caspase regulator
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7zoq
Q-score: 0.431
Ekundayo B, Torre D, Beckert B, Nazarov S, Myasnikov A, Stahlberg H, Ni D
Nat Struct Mol Biol (2023) 30 pp. 135-139 [ DOI: doi:10.1038/s41594-022-00894-5 Pubmed: 36471056 ]
- Cas7-11 (207 kDa, Protein from Desulfonema magnum)
- Rna (39-mer) (12 kDa, RNA from Desulfonema magnum)
- Tpr-chat (95 kDa, Protein from Desulfonema magnum)
- Zinc ion (65 Da, Ligand)
- Cas7-11 with trp-chat-full (310 kDa, Complex from Desulfonema magnum)
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD and NTD (Local)
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7qo9
Q-score: 0.38
Ni D, Lau K, Turelli P, Raclot C, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D
bioRxiv (2021) [ DOI: doi:10.1101/2021.12.27.474250 ]
- Spike trimer (752 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein,sars-cov-2 s omicron spike b.1.1.529 (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Water (18 Da, Ligand)
SARS-CoV-2 S Omicron Spike B.1.1.529
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7qo7
Q-score: 0.389
Ni D, Lau K, Turelli P, Raclot C, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D
bioRxiv (2021) [ DOI: doi:10.1101/2021.12.27.474250 ]