Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8sqn
Q-score: 0.366
Zimmerman O, Zimmerman MI, Raju S, Nelson CA, Errico JM, Madden EA, Holmes AC, Hassan AO, VanBlargan LA, Kim AS, Adams LJ, Basore K, Whitener BM, Palakurty S, Davis-Adams HG, Sun C, Gilliland Jr T, Earnest JT, Ma H, Ebel GD, Zmasek C, Scheuermann RH, Klimstra WB, Fremont DH, Diamond MS
Cell (2023) 186 pp. 4818-4833.e25 [ DOI: doi:10.1016/j.cell.2023.09.007 Pubmed: 37804831 ]
- E2 envelope glycoprotein (46 kDa, Protein from Western equine encephalitis virus)
- Western equine encephalitis virus vlp in complex with a chimeric mxra8 receptor (avian d1 with mammalian d2) (7 MDa, Complex from Western equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- E1 envelope glycoprotein (47 kDa, Protein from Western equine encephalitis virus)
- Dud1mod2 chimeric mxra8 (30 kDa, Protein from Anas platyrhynchos)
Basore K, Ma H, Kafai NM, Mackin S, Kim AS, Nelson CA, Diamond MS, Fremont DH
Nature (2021) 598 pp. 672-676 [ DOI: doi:10.1038/s41586-021-03963-9 Pubmed: 34646020 ]
- Low-density lipoprotein receptor class a domain-containing protein 3 (Protein from Mus musculus)
- Ldlrad3 receptor domains 1 and 2 (Cellular component from Mus musculus)
- Venezuelan equine encephalitis vlp (Complex from Venezuelan equine encephalitis virus)
- Venezuelan equine encephalitis vlp in complex with domains 1 and 2 of the ldlrad3 receptor (Complex from Mus musculus)
- Capsid (Protein from Venezuelan equine encephalitis virus)
- E2 envelope glycoprotein (Protein from Venezuelan equine encephalitis virus)
- E1 envelope glycoprotein (Protein from Venezuelan equine encephalitis virus)
CryoEM structure of Venezuelan equine encephalitis virus VLP in complex with the LDLRAD3 receptor
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7n1h
Q-score: 0.149
Basore K, Ma H, Kafai NM, Mackin S, Kim AS, Nelson CA, Diamond MS, Fremont DH
Nature (2021) 598 pp. 672-676 [ DOI: doi:10.1038/s41586-021-03963-9 Pubmed: 34646020 ]
- E1 envelope glycoprotein (47 kDa, Protein from Venezuelan equine encephalitis virus)
- Venezuelan equine encephalitis vlp (Complex from Venezuelan equine encephalitis virus)
- Calcium ion (40 Da, Ligand)
- E2 envelope glycoprotein (47 kDa, Protein from Venezuelan equine encephalitis virus)
- Low-density lipoprotein receptor class a domain-containing protein 3 (4 kDa, Protein from Mus musculus)
- Ldlrad3 receptor domain 1 (Cellular component from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Venezuelan equine encephalitis vlp in complex with domain 1 of the ldlrad3 receptor (Complex from Venezuelan equine encephalitis virus)
- Capsid (18 kDa, Protein from Venezuelan equine encephalitis virus)
CryoEM structure of Venezuelan equine encephalitis virus VLP
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7n1i
Q-score: 0.144
Basore K, Ma H, Kafai NM, Mackin S, Kim AS, Nelson CA, Diamond MS, Fremont DH
Nature (2021) 598 pp. 672-676 [ DOI: doi:10.1038/s41586-021-03963-9 Pubmed: 34646020 ]
- E1 envelope glycoprotein (47 kDa, Protein from Venezuelan equine encephalitis virus)
- Venezuelan equine encephalitis virus (Virus from Venezuelan equine encephalitis virus)
- E2 envelope glycoprotein (47 kDa, Protein from Venezuelan equine encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Capsid (18 kDa, Protein from Venezuelan equine encephalitis virus)
Electron Cryo-Microscopy Of Chikungunya VLP
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 6nk5
Q-score: 0.304
Basore K, Kim AS, Nelson CA, Zhang R, Smith BK, Uranga C, Vang L, Cheng M, Gross ML, Smith J, Diamond MS, Fremont DH
Cell (2019) 177 pp. 1725- [ Pubmed: 31080061 DOI: doi:10.1016/j.cell.2019.04.006 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- E1 glycoprotein (47 kDa, Protein from Chikungunya virus (strain 37997))
- Capsid protein (16 kDa, Protein from Chikungunya virus (strain 37997))
- Chikungunya virus (Virus from Chikungunya virus)
- E2 glycoprotein (46 kDa, Protein from Chikungunya virus (strain 37997))
Electron Cryo-Microscopy Of Chikungunya VLP in complex with mouse Mxra8 receptor
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 6nk6
Q-score: 0.266
Basore K, Kim AS, Nelson CA, Zhang R, Smith BK, Uranga C, Vang L, Cheng M, Gross ML, Smith J, Diamond MS, Fremont DH
Cell (2019) 177 pp. 1725- [ Pubmed: 31080061 DOI: doi:10.1016/j.cell.2019.04.006 ]
- Chikungunya virus like particle (Complex from Chikungunya virus (strain 37997))
- E1 glycoprotein (47 kDa, Protein from Chikungunya virus strain Senegal 37997)
- Capsid protein (16 kDa, Protein from Chikungunya virus strain Senegal 37997)
- E2 glycoprotein (46 kDa, Protein from Chikungunya virus strain Senegal 37997)
- Mxra8 receptor (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Matrix remodeling-associated protein 8 (30 kDa, Protein from Mus musculus)
- Chikungunya virus like particle with mxra8 (Complex)
Electron Cryo-Microscopy of Chikungunya in Complex with Mouse Mxra8 Receptor
Resolution: 4.99 Å
EM Method: Single-particle
Fitted PDBs: 6nk7
Q-score: 0.205
Basore K, Kim AS, Nelson CA, Zhang R, Smith BK, Uranga C, Vang L, Cheng M, Gross ML, Smith J, Diamond MS, Fremont DH
Cell (2019) 177 pp. 1725- [ Pubmed: 31080061 DOI: doi:10.1016/j.cell.2019.04.006 ]
- E3 glycoprotein (6 kDa, Protein from Chikungunya virus)
- Chikungunya virus (Complex from Chikungunya virus)
- Mouse mxra8 receptor ectodomain (Complex from Mus musculus)
- Matrix remodeling-associated protein 8 (30 kDa, Protein from Mus musculus)
- E2 glycoprotein (47 kDa, Protein from Chikungunya virus)
- E1 glycoprotein (47 kDa, Protein from Chikungunya virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Chikungunya virus with mxra8 receptor (Complex)
- Capsid protein (16 kDa, Protein from Chikungunya virus)
Mouse norovirus model using the crystal structure of MNV P domain and the Norwalkvirus shell domain
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 6crj
Q-score: 0.081
Nelson CA, Wilen CB, Dai YN, Orchard RC, Kim AS, Stegeman RA, Hsieh LL, Smith TJ, Virgin HW, Fremont DH
PNAS (2018) 115 pp. E9201-E9210 [ DOI: doi:10.1073/pnas.1805797115 Pubmed: 30194229 ]