Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 8ydx
Q-score: 0.237
Nakamura S, Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A, Numoto N, Tanaka A, Kawabata S, Sakaguchi S, Emi A, Suzuki Y, Fujiyoshi Y
To Be Published
- Cespiace (4 kDa, Protein from synthetic construct)
- Sars-cov-2 spike ectodomain (hexapro, omicron ba.2 variant) in complex with cespiace (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 8ydy
Q-score: 0.084
Nakamura S, Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A, Numoto N, Tanaka A, Kawabata S, Sakaguchi S, Emi A, Suzuki Y, Fujiyoshi Y
To Be Published
- Cespiace (4 kDa, Protein from synthetic construct)
- Sars-cov-2 spike ectodomain (hexapro, omicron ba.5 variant) in complex with cespiace (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 8ydz
Q-score: 0.2
Nakamura S, Tanimura Y, Nomura R, Suzuki H, Nishikawa K, Kamegawa A, Numoto N, Tanaka A, Kawabata S, Sakaguchi S, Emi A, Suzuki Y, Fujiyoshi Y
To Be Published
- Cespiace (4 kDa, Protein from synthetic construct)
- Sars-cov-2 spike ectodomain (hexapro, omicron ba.5 variant) in complex with cespiace (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (144 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of arginine oxidase from Pseudomonas sp. TRU 7192
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8jt7
Q-score: 0.689
Yamaguchi H, Takahashi K, Numoto N, Suzuki H, Tatsumi M, Kamegawa A, Nishikawa K, Asano Y, Mizukoshi T, Miyano H, Fujiyoshi Y, Sugiki M
J.Biochem. (2025) 177 pp. 27-36 [ Pubmed: 39420599 DOI: doi:10.1093/jb/mvae070 ]
- Water (18 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Homooctamer of arginine oxidase (540 kDa, Complex from Pseudomonas sp.)
- Amine oxidoreductase (67 kDa, Protein from Pseudomonas sp.)
Cryo-EM structure of hAQP2 in DDM
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8gcl
Q-score: 0.56
Kamegawa A, Suzuki S, Suzuki H, Nishikawa K, Numoto N, Fujiyoshi Y
J Struct Biol (2023) 215 pp. 107984-107984 [ DOI: doi:10.1016/j.jsb.2023.107984 Pubmed: 37315821 ]
- Aquaporin-2 (28 kDa, Protein from Homo sapiens)
- Tetrameter of haqp2 (Complex from Homo sapiens)
Structure of human alpha-2/delta-1 with mirogabalin
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8if3
Q-score: 0.447
Kozai D, Numoto N, Nishikawa K, Kamegawa A, Kawasaki S, Hiroaki Y, Irie K, Oshima A, Hanzawa H, Shimada K, Kitano Y, Fujiyoshi Y
J Mol Biol (2023) 435 pp. 168049-168049 [ Pubmed: 36933823 DOI: doi:10.1016/j.jmb.2023.168049 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Voltage-dependent calcium channel subunit alpha-2/delta-1 (140 kDa, Cellular component from Homo sapiens)
- 2-[(1r,5s,6s)-6-(aminomethyl)-3-ethyl-6-bicyclo[3.2.0]hept-3-enyl]acetic acid (209 Da, Ligand)
- Voltage-dependent calcium channel subunit alpha-2/delta-1 (124 kDa, Protein from Homo sapiens)
Structure of human alpha-2/delta-1 without mirogabalin
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8if4
Q-score: 0.41
Kozai D, Numoto N, Nishikawa K, Kamegawa A, Kawasaki S, Hiroaki Y, Irie K, Oshima A, Hanzawa H, Shimada K, Kitano Y, Fujiyoshi Y
J Mol Biol (2023) 435 pp. 168049-168049 [ Pubmed: 36933823 DOI: doi:10.1016/j.jmb.2023.168049 ]