SARS-CoV-2 Omicron BQ.1.1 RBD complexed with human ACE2
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8wdy
Q-score: 0.511
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- Sars-cov-2 omicron bq.1.1 rbd complexed with human ace2 (Complex)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bq.1.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BQ.1 RBD complexed with human ACE2
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8wdz
Q-score: 0.508
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- Sars-cov-2 omicron bq.1 rbd complexed with human ace2 (Complex)
- Sars-cov-2 omicron bq.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron XBB RBD complexed with human ACE2
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8we0
Q-score: 0.472
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- Ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 omicron xbb rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron xbb rbd complexed with human ace2 (Complex)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron BF.7 RBD complexed with human ACE2
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8we1
Q-score: 0.534
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- Sars-cov-2 omicron bf.7 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike protein s2' (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ace2 (Complex from Homo sapiens)
- Sars-cov-2 omicron bf.7 rbd complexed with human ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
SARS-CoV-2 Omicron XBB.1.5 RBD complexed with human ACE2 and S304
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8we4
Q-score: 0.462
Li W, Xu Z, Niu T, Xie Y, Zhao Z, Li D, He Q, Sun W, Shi K, Guo W, Chang Z, Liu K, Fan Z, Qi J, Gao GF
EMBO J (2024) 43 pp. 1484-1498 [ DOI: doi:10.1038/s44318-024-00062-z Pubmed: 38467833 ]
- S304 fab light chain (23 kDa, Protein from Homo sapiens)
- Fabs304 (Complex from Homo sapiens)
- S304 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron xbb.1.5 rbd complexed with human ace2 and fab s304 (Complex)
- Zinc ion (65 Da, Ligand)
- Ace2 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron xbb.1.5 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (92 kDa, Protein from Homo sapiens)
Cryo-EM structures of Alphacoronavirus spike glycoprotein
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7cyc
Q-score: 0.424
Song X, Shi Y, Ding W, Niu T, Sun L, Tan Y, Chen Y, Shi J, Xiong Q, Huang X, Xiao S, Zhu Y, Cheng C, Fu ZF, Liu ZJ, Peng G
Nat Commun (2021) 12 pp. 141-141 [ Pubmed: 33420048 DOI: doi:10.1038/s41467-020-20401-y ]
- Spike glycoprotein (122 kDa, Protein from Human coronavirus 229E)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hcov-229e spike trimer (Complex from Human coronavirus 229E)