The cryo-EM structure of the EcBAM/EspP(beta1-12) complex
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8spr
Q-score: 0.413
Wu R, Ryoo D, Kuo KM, Gumbart JC, Noinaj N
To Be Published
- Outer membrane protein assembly factor bame (10 kDa, Protein from Escherichia coli)
- Serine protease espp (38 kDa, Protein from Escherichia coli O157)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (88 kDa, Protein from Escherichia coli)
- Bam/espp(beta1-12) (Complex from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (34 kDa, Protein from Escherichia coli 0.1288)
The cryo-EM structure of the EcBAM/EspP(beta8-12) complex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8sqa
Q-score: 0.408
Wu R, Ryoo D, Kuo KM, Gumbart JC, Noinaj N
To Be Published
- Maltose/maltodextrin-binding periplasmic protein,autotransporter protein espp translocator (60 kDa, Protein from Escherichia coli O157)
- Outer membrane protein assembly factor bamc (34 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (88 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Bam/espp(beta1-12) (Complex from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (10 kDa, Protein from Escherichia coli)
The cryo-EM structure of the EcBAM/EspP(beta7-12) complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8sqb
Q-score: 0.395
Wu R, Ryoo D, Kuo KM, Gumbart JC, Noinaj N
To Be Published
- Outer membrane protein assembly factor bamc (34 kDa, Protein from Escherichia coli)
- Maltodextrin-binding protein,espp(b7-12) (64 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (88 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Bam/espp(beta1-12) (Complex from Escherichia coli)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (10 kDa, Protein from Escherichia coli)
Cryo-EM structure of Csy-AcrIF24
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7t3j
Q-score: 0.48
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of Csy-AcrIF24 dimer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7t3k
Q-score: 0.311
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of Csy-AcrIF24-DNA dimer
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7t3l
Q-score: 0.196
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Dna (5'-d(p*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*g)-3') (6 kDa, DNA from Escherichia)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Dna (5'-d(p*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*c)-3') (6 kDa, DNA from Escherichia)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of the Csy-AcrIF24-promoter DNA dimer
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7taw
Q-score: 0.425
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Dna (5'-d(p*ap*tp*ap*gp*cp*tp*cp*gp*ap*tp*tp*cp*gp*ap*gp*cp*tp*ap*a)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Dna (5'-d(p*tp*tp*ap*gp*cp*tp*cp*gp*ap*ap*tp*cp*gp*ap*gp*cp*tp*ap*t)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of the Csy-AcrIF24-promoter DNA complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7tax
Q-score: 0.316
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Dna (5'-d(p*ap*tp*ap*gp*cp*tp*cp*gp*ap*tp*tp*cp*gp*ap*gp*cp*tp*ap*a)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Dna (5'-d(p*tp*tp*ap*gp*cp*tp*cp*gp*ap*ap*tp*cp*gp*ap*gp*cp*tp*ap*t)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
The 6.1 angstrom cryoEM map of calprotectin bound to TdfH
Bera AK, Wu R, Harrison S, Cornelissen CN, Chazin WJ, Noinaj N
Commun Biol (2022) 5 pp. 103-103 [ Pubmed: 35102276 DOI: doi:10.1038/s42003-022-03039-y ]
Structure of a BAM/EspP(beta9-12) hybrid-barrel intermediate
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ri4
Q-score: 0.442
Wu R, Bakelar JW, Lundquist K, Zhang Z, Kuo KM, Ryoo D, Pang YT, Sun C, White T, Klose T, Jiang W, Gumbart JC, Noinaj N
Nat Commun (2021) 12 pp. 7131-7131 [ DOI: doi:10.1038/s41467-021-27449-4 Pubmed: 34880256 ]
- Structure of a bam/espp hybrid-barrel intermediate (290 MDa, Complex from Escherichia coli)
- Esppbeta9-12 (8 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli)