Cryo-EM structure of Csy-AcrIF24
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7t3j
Q-score: 0.48
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of Csy-AcrIF24 dimer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7t3k
Q-score: 0.311
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of Csy-AcrIF24-DNA dimer
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7t3l
Q-score: 0.196
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Dna (5'-d(p*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*gp*g)-3') (6 kDa, DNA from Escherichia)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Dna (5'-d(p*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*cp*c)-3') (6 kDa, DNA from Escherichia)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of the Csy-AcrIF24-promoter DNA dimer
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7taw
Q-score: 0.425
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Dna (5'-d(p*ap*tp*ap*gp*cp*tp*cp*gp*ap*tp*tp*cp*gp*ap*gp*cp*tp*ap*a)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Dna (5'-d(p*tp*tp*ap*gp*cp*tp*cp*gp*ap*ap*tp*cp*gp*ap*gp*cp*tp*ap*t)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Cryo-EM structure of the Csy-AcrIF24-promoter DNA complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7tax
Q-score: 0.316
Mukherjee IA, Gabel C, Noinaj N, Bondy-Denomy J, Chang L
Nat Chem Biol (2022) 18 pp. 1417-1424 [ Pubmed: 36163386 DOI: doi:10.1038/s41589-022-01137-w ]
- Csy-acrif (400 MDa, Complex from Pseudomonas)
- Dna (5'-d(p*ap*tp*ap*gp*cp*tp*cp*gp*ap*tp*tp*cp*gp*ap*gp*cp*tp*ap*a)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy2 (36 kDa, Protein from Pseudomonas)
- Dna (5'-d(p*tp*tp*ap*gp*cp*tp*cp*gp*ap*ap*tp*cp*gp*ap*gp*cp*tp*ap*t)-3') (5 kDa, DNA from Pseudomonas)
- Crispr type i-f/ypest-associated protein csy3 (39 kDa, Protein from Pseudomonas)
- Crispr-associated protein csy1 (49 kDa, Protein from Pseudomonas)
- Crispr-associated endonuclease cas6/csy4 (21 kDa, Protein from Pseudomonas)
- Rna (61-mer) (19 kDa, RNA from Pseudomonas)
- Acrif24 (24 kDa, Protein from Pseudomonas)
Structure of a BAM/EspP(beta9-12) hybrid-barrel intermediate
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ri4
Q-score: 0.442
Wu R, Bakelar JW, Lundquist K, Zhang Z, Kuo KM, Ryoo D, Pang YT, Sun C, White T, Klose T, Jiang W, Gumbart JC, Noinaj N
Nat Commun (2021) 12 pp. 7131-7131 [ DOI: doi:10.1038/s41467-021-27449-4 Pubmed: 34880256 ]
- Structure of a bam/espp hybrid-barrel intermediate (290 MDa, Complex from Escherichia coli)
- Esppbeta9-12 (8 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (39 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli)
Structure of a BAM in MSP1E3D1 nanodiscs at 4 Angstrom resolution
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7ri5
Q-score: 0.385
Wu R, Bakelar JW, Lundquist K, Zhang Z, Kuo KM, Ryoo D, Pang YT, Sun C, White T, Klose T, Jiang W, Gumbart JC, Noinaj N
Nat Commun (2021) 12 pp. 7131-7131 [ DOI: doi:10.1038/s41467-021-27449-4 Pubmed: 34880256 ]
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli)
- Structure of bam in nanodisc using msp1e3d1 (210 MDa, Complex from Escherichia coli)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli)
Structure of BAM in MSP1E3D1 nanodiscs prepared from E. coli outer membranes
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 7ri6
Q-score: 0.2
Wu R, Bakelar JW, Lundquist K, Zhang Z, Kuo KM, Ryoo D, Pang YT, Sun C, White T, Klose T, Jiang W, Gumbart JC, Noinaj N
Nat Commun (2021) 12 pp. 7131-7131 [ DOI: doi:10.1038/s41467-021-27449-4 Pubmed: 34880256 ]
- Structure of bam in msp nanodiscs prepared from native membranes (210 MDa, Complex from Escherichia coli)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli)
The structure of BAM in MSP1D1 nanodiscs
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ri7
Q-score: 0.196
Wu R, Bakelar JW, Lundquist K, Zhang Z, Kuo KM, Ryoo D, Pang YT, Sun C, White T, Klose T, Jiang W, Gumbart JC, Noinaj N
Nat Commun (2021) 12 pp. 7131-7131 [ DOI: doi:10.1038/s41467-021-27449-4 Pubmed: 34880256 ]
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli)
- Structure of bam in nanodiscs using msp1d1 (210 MDa, Complex from Escherichia coli)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli)
The structure of BAM in MSP2N2 nanodiscs
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 7ri8
Q-score: 0.193
Wu R, Bakelar JW, Lundquist K, Zhang Z, Kuo KM, Ryoo D, Pang YT, Sun C, White T, Klose T, Jiang W, Gumbart JC, Noinaj N
Nat Commun (2021) 12 pp. 7131-7131 [ DOI: doi:10.1038/s41467-021-27449-4 Pubmed: 34880256 ]
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamb (41 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli)
- Structure of bam in nanodiscs using msp2n2 (210 MDa, Complex from Escherichia coli)